Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h16
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)                      32   0.47 
SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)                 29   2.5  
SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_54205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 764

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 277 RIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFY 456
           R+  F +S IY   +I   +F+   D+   I  ++FIC      +    I TT ++  FY
Sbjct: 332 RVKEFIISPIYPVLIISYEMFIRSQDDIMNIKFDLFICDEAHR-LKNSAIKTTTVAKAFY 390

Query: 457 DKF 465
           DKF
Sbjct: 391 DKF 393


>SB_38580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 990

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 591 YITEVNHAGTTCW-*SRCHGPKYCHNNY 511
           YI +  HAG  CW  S CH  +Y  +NY
Sbjct: 842 YIRDTKHAGKCCWSCSPCHYNQYVLDNY 869


>SB_25430| Best HMM Match : MFS_1 (HMM E-Value=1.3e-33)
          Length = 607

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 232 LGSLTPNPNVTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTL-- 405
           +GS+T  P +   ++ + S+ +    L FL+ A    F V  T  IA  I+   FG++  
Sbjct: 278 IGSITFRPILGRLSDYLPSYRLQIFQLCFLVIALANTFVVLATNYIAFAIYAFIFGSVDG 337

Query: 406 YIWIQCIITT 435
             W Q  + T
Sbjct: 338 IFWSQMSVIT 347


>SB_6794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 394 FGTLYIWIQ-----CIITTYISTLFYDKFLLLLRQCLAKV 498
           FGTLYIW+       + T      F +KF+ L+R  L+ V
Sbjct: 674 FGTLYIWVAGRGGLQVTTVPFGDEFIEKFVKLIRSALSSV 713


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/67 (28%), Positives = 38/67 (56%)
 Frame = +1

Query: 316  FLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAK 495
            F+ +AFLFLF + +T +I L  F+     L++ +  ++   +S  F+  F+   R  + +
Sbjct: 854  FISFAFLFLFLLVDTVLI-LFAFL-----LFLLVDTVL--ILSAFFFLVFVSRYRLYIVR 905

Query: 496  VSFLIII 516
            VS L+++
Sbjct: 906  VSLLVLV 912


>SB_28176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 286 SFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKF 465
           S   S ++L +L+Y    LF+V  TF+I +  F   FG   ++    + T ++T+  DK 
Sbjct: 342 SAHTSSLWLAYLMY---ILFRVAYTFLITIARFALVFG-CNMFAALALQTILTTIVADKS 397

Query: 466 ---LLLLRQCLAKVSFLIII 516
              L ++ Q +   S+  II
Sbjct: 398 GLDLNIIEQFVVYGSYFFII 417


>SB_54205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 493 KVSFLIIIVMAIFGTMASTLPAGGSGVIYFCYITTSLCSNLSAAI 627
           K+ F+ IIV+ +F ++    P+   GV  F YI +      S  I
Sbjct: 127 KLIFVTIIVIQVFTSVIRVFPSHKMGVTLFVYIVSGFSFRQSIVI 171


>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 1   GYILFGIQHLPNKYYCFSIMLLFKFGLIILFSTFITSICFQILKETNSLD--TGLAFLYI 174
           G I F  QH+P++ Y   + +    G+I L  T + +  F IL++   +     ++ +YI
Sbjct: 657 GMIPFLKQHVPDQIYRLWMAIFLHAGIIHLLCTLVFN--FTILRDLERMAGWIRISIIYI 714

Query: 175 ASGAIAGKII 204
            SG I G +I
Sbjct: 715 FSG-IGGYLI 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,873,697
Number of Sequences: 59808
Number of extensions: 450012
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)