Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h16
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.                 32   1.6  
AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.     32   1.6  
AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.                32   1.6  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   2.7  
AB065750-1|BAC05970.1|  309|Homo sapiens seven transmembrane hel...    31   3.6  
AF399575-1|AAK95060.1|  213|Homo sapiens olfactory receptor prot...    30   8.3  

>EF452236-1|ABO40479.1| 1866|Homo sapiens NOD4 protein.
          Length = 1866

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 46  CFSIMLLFKFGLIILFSTFIT--SICFQILKETNSLDTGLAFLYIASGAIAGKIIYDRYQ 219
           CF  + LF+F  + L + F+T   + F +     S D    F Y+   A    +I+D   
Sbjct: 252 CFQALFLFEFRQLNLITRFLTPSELLFDLYLSPES-DHDTVFQYLEKNADQVLLIFDGLD 310

Query: 220 Q-IQILGSLTPNPNVTSFAN 276
           + +Q +G   P P +T F++
Sbjct: 311 EALQPMGPDGPGPVLTLFSH 330


>AK074182-1|BAB85008.1|  733|Homo sapiens FLJ00255 protein protein.
          Length = 733

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 46  CFSIMLLFKFGLIILFSTFIT--SICFQILKETNSLDTGLAFLYIASGAIAGKIIYDRYQ 219
           CF  + LF+F  + L + F+T   + F +     S D    F Y+   A    +I+D   
Sbjct: 265 CFQALFLFEFRQLNLITRFLTPSELLFDLYLSPES-DHDTVFQYLEKNADQVLLIFDGLD 323

Query: 220 Q-IQILGSLTPNPNVTSFAN 276
           + +Q +G   P P +T F++
Sbjct: 324 EALQPMGPDGPGPVLTLFSH 343


>AF389420-1|AAO59377.1| 1866|Homo sapiens NOD27 protein.
          Length = 1866

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 46  CFSIMLLFKFGLIILFSTFIT--SICFQILKETNSLDTGLAFLYIASGAIAGKIIYDRYQ 219
           CF  + LF+F  + L + F+T   + F +     S D    F Y+   A    +I+D   
Sbjct: 252 CFQALFLFEFRQLNLITRFLTPSELLFDLYLSPES-DHDTVFQYLEKNADQVLLIFDGLD 310

Query: 220 Q-IQILGSLTPNPNVTSFAN 276
           + +Q +G   P P +T F++
Sbjct: 311 EALQPMGPDGPGPVLTLFSH 330


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 301 FIYLGFLIYAFLFLFKVDNTFI---IALNIFICGFGTLYIWIQCIITTYISTLFYDKFLL 471
           +IY+   +Y +L+++    T+I   I + I+IC +  LYI++      YI    +    +
Sbjct: 24  YIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHI 83

Query: 472 LLRQCLAKVSFLIIIV 519
            +  C+    F+ + +
Sbjct: 84  FIYICICLYIFIYVFI 99


>AB065750-1|BAC05970.1|  309|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +1

Query: 361 FIIALNIFICGFGTLYIWIQCIITTY-ISTLFYDKFLLLLRQCLAKVSFLII-IVMAIFG 534
           FI A + FIC    L + + C++  Y + T   +     L  C++ ++ +I+  +  IF 
Sbjct: 196 FIAANSGFICLLNCLLLLVSCVVILYSLKTHSLEARHEALSTCVSHITVVILSFIPCIFV 255

Query: 535 TM--ASTLPAGGSGVIYFCYITTSL 603
            M   +TLP   +  +++  IT+ L
Sbjct: 256 YMRPPATLPIDKAVAVFYTMITSML 280


>AF399575-1|AAK95060.1|  213|Homo sapiens olfactory receptor
           protein.
          Length = 213

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 361 FIIALNIFICGFGTLYIWIQCIITTY-ISTLFYDKFLLLLRQCLAKVSFLII-IVMAIFG 534
           FI A + FIC    L + + C++  Y + T   +     L  C++ ++ +I+  +  IF 
Sbjct: 131 FIAANSGFICLLNCLLLLVSCVVILYSLKTHSLEARHEALSTCVSHITVVILSFIPCIFV 190

Query: 535 TM--ASTLPAGGSGVIYFCYITT 597
            M   +TLP   +  +++  IT+
Sbjct: 191 YMRPPATLPIDKAVAVFYTMITS 213


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,898,179
Number of Sequences: 237096
Number of extensions: 2257383
Number of successful extensions: 4466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4465
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)