Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h16
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48009-3|CAA88078.1| 331|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z72515-5|CAH60771.2| 331|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine re... 29 3.8
Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical pr... 28 5.1
U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical p... 28 5.1
Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 27 8.9
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 27 8.9
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ... 27 8.9
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 27 8.9
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 27 8.9
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 27 8.9
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 27 8.9
>Z83123-6|CAD45601.1| 327|Caenorhabditis elegans Hypothetical
protein T04A11.12 protein.
Length = 327
Score = 34.3 bits (75), Expect = 0.077
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 307 YLGFLIYAFLF---LFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLL 477
Y + Y F F +F+++ TF +N F F TL+ CIIT +I L K LL
Sbjct: 180 YCSYAAYPFPFGAIIFRIERTFFGLVNNFSLLFNTLFWMTCCIITNFILLLLLIKSRCLL 239
>Z66497-7|CAE17887.1| 197|Caenorhabditis elegans Hypothetical
protein K08F8.7 protein.
Length = 197
Score = 32.7 bits (71), Expect = 0.24
Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Frame = +1
Query: 292 SVSFIYLGFLIYAFLF-LFKVDNTFIIALNIFICG-----FGTLYIWIQCIIT-TYISTL 450
+V + +L+ FL +F + FII L+ + FG L++ I + + + +S L
Sbjct: 14 NVQHSFYFYLVLRFLAAIFCIIVIFIIGLSQYWTNRVSAVFGLLFVIIALLFSASAVSIL 73
Query: 451 F-YD-KFLLLLRQCLAKVSF-LIIIVMAIFGTMASTLPAGGSGVIYFCYITTSLCSNLSA 621
F +D + ++++CL F L I+V AI +A+ + Y CY + S + A
Sbjct: 74 FIWDVETTTIVKRCLFTFVFALSILVSAILFLIANDGCDSRAITQYGCYQSVSTGTFQVA 133
Query: 622 AIFCVFILTF 651
++FC +L F
Sbjct: 134 SVFCFLVLVF 143
>Z77652-7|CAB01119.1| 341|Caenorhabditis elegans Hypothetical
protein C06B3.10 protein.
Length = 341
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 262 TSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWI 417
T F +A F+V F+Y + ++ D II L F FG ++ W+
Sbjct: 94 TFFGTSMAVFAVHFVYRYLTVIGSYYIKNYDRQIIITLMTFPVIFGLVWFWM 145
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +1
Query: 316 FLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAK 495
FL+++FLFL +D L +F FG L + I ++ I+ + +++ L+
Sbjct: 70 FLVFSFLFLQAMDTE--SPLGVFSATFGFLTVCITNVL--LIAGVRLKRYIFLIPYFTVC 125
Query: 496 VSFLIIIVMAIF 531
V F+ ++++ +F
Sbjct: 126 VLFIFVLILHLF 137
>Z82052-6|CAB04829.4| 327|Caenorhabditis elegans Hypothetical
protein T25E12.11 protein.
Length = 327
Score = 29.9 bits (64), Expect = 1.7
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Frame = +1
Query: 58 MLLFKFGLIILFSTFITSI-CFQILKETNSLDTGLAFLYIASGAIAGKI-IYDRYQQIQI 231
+L+ K G++I+F F+TSI F IL++T L L FL ++ + I+ ++
Sbjct: 89 ILVKKIGILIMFIFFMTSIFIFHILQQTIHL---LLFLLAIINSLKYHLPIHFAFKSQDF 145
Query: 232 LGSLTPNPNVTSFANRIASFSVSFI--YLGFLIYAFLFLFKVDNTFIIALNIFICGFGTL 405
+ NV + A+F + F+ Y + + LN+ I F T
Sbjct: 146 IRKYITPLNVFFISLDAAAFMLHFLRQYCLLSTEKVQIFIACNEVLYMFLNVVI-SFLTP 204
Query: 406 YIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVIYF 582
+I+I +I + + + L + SFL+++ I + G S + +F
Sbjct: 205 FIYIPIMIDIRKNRHLHSPQHMFLHNYIFFQSFLVVLFKLII--LPFCFETGNSSIEFF 261
>Z48009-3|CAA88078.1| 331|Caenorhabditis elegans Hypothetical
protein AH6.4 protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.7
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Frame = +1
Query: 268 FANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYIST 447
+AN I F + I LG + Y +FL ++I + LY+ I +I +
Sbjct: 65 YAN-IHQFMYAIISLG-MAYKGIFLLDETCEWLITEKDCLLYTEVLYVGISGMIYSQTGI 122
Query: 448 LFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTL-------PAGGSGVIYFCYITTS-L 603
L F L R AK+S L+ I+++ F + S GV+ C++
Sbjct: 123 LIERAFATLYRNYTAKISRLVGIIISTFVLIMSIATYQIIISDDPLEGVVLSCFVPAQHS 182
Query: 604 CSNLSAAIFCVFILTF 651
+ +F ILTF
Sbjct: 183 AQRANTFLFIALILTF 198
>Z72515-5|CAH60771.2| 331|Caenorhabditis elegans Hypothetical
protein T11A5.7 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 28 LPNKYYCFSIMLLFKFGLIILFSTFI 105
+PN Y CF++ L++ FG+ + T +
Sbjct: 93 IPNIYRCFTLRLMYNFGMWVTMCTAV 118
>Z72515-2|CAA96682.3| 329|Caenorhabditis elegans Hypothetical
protein T11A5.2 protein.
Length = 329
Score = 28.7 bits (61), Expect = 3.8
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Frame = +1
Query: 22 QHLPNKYYCFSIMLLFKFGLIILFSTFITSICFQIL---------KETNSLDTGLAFLYI 174
Q +PN Y CF L++ GL I ST ++ I + L K++ + LA ++
Sbjct: 93 QMIPNIYRCFVFRLMYNSGLWITNSTAVSLILERWLATKRSMTYEKDSTIIGLLLAIVHF 152
Query: 175 ASGAIAGKIIYD--RYQQIQILGSLTPNPNVTSFANRIASFSVSFIYLGFLIYAFL 336
A+ +Y R+ + +T P+ A A+ S+ F + + + FL
Sbjct: 153 LIAALPLCFLYSQTRFDGAVMYYCVTATPSAPYSAQVGATVSICFQVVARIAFEFL 208
>AF101305-5|AAF98597.2| 341|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 3 protein.
Length = 341
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 382 FICGFGTLYIWIQ---CIITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTL 552
FI FG I I +I +I+T D + R+ + F+ I +AI T
Sbjct: 104 FIYRFGEYIIEISPFILLIERFIATFKADSYENR-RKLYGIIFFITHISIAIMFLYFDTD 162
Query: 553 PAGGSGVIYFCYITTSLCSNLSAAIFCVFILTFQ 654
GG+ +I+FC+ +TS + LS I FI Q
Sbjct: 163 FTGGAIMIFFCWTSTS-ANRLSVNIPTFFIFFTQ 195
>Z72515-3|CAA96683.2| 330|Caenorhabditis elegans Hypothetical
protein T11A5.3 protein.
Length = 330
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Frame = +1
Query: 28 LPNKYYCFSIMLLFKFGLIILFSTFITSICFQILK-------ETNSLDTG--LAFLYIAS 180
+PN Y CF + L++ GL I ST ++ I + L E S+ G LAF A
Sbjct: 95 VPNIYRCFVLRLMYNTGLWITNSTAVSLIIERWLATKRSATYEQESVRMGIFLAFFQFAV 154
Query: 181 GAIAGKIIYDRYQ 219
+I ++Y + Q
Sbjct: 155 TSIPLAVLYSKIQ 167
>U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical
protein F46F11.8 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Frame = -1
Query: 572 TPEPPAGKVDAMVPNIAITI-------IIRKLTLARHCRSNSKNLS*NRVEIYVVMMHWI 414
TP PA A VP+ +++ +I + C N +N+S + V H +
Sbjct: 144 TPSTPARAAPASVPSTSMSAEFTAKNELIANGITCKRCSKNIRNISPITQLVMAVRDHVM 203
Query: 413 HIYNVPNPHIKILS 372
++ NPH+K S
Sbjct: 204 EHFDKENPHLKRFS 217
>Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical
protein C18D11.1 protein.
Length = 263
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +1
Query: 304 IYLGFLIYAFLFLFKVDNTFIIALNIFICGFGTLYIWIQCIITTYISTLFYDK 462
I GF+ F+F + N IA IF G L+I + II ++ K
Sbjct: 151 IVRGFISVFFIFWYSYGNLARIATGIFFLGLQFLHISLWMIIAAKFQRIYNRK 203
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Frame = +1
Query: 256 NVTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFICG-FGTLY-----IW- 414
N+ F + I F ++ I + I+ + N F+ +NI +CG F +Y +W
Sbjct: 199 NMQFFNDHIFEFFLASIVSIWQIFYTFNVIPSTNVFVFCVNIAVCGSFSIMYMIPVAVWW 258
Query: 415 --IQCIITTYIS 444
I C + Y+S
Sbjct: 259 GTIMCSLIVYLS 270
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 IITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVI 576
++ +STL Y+KF+ + LAKV L I A F + L A S I
Sbjct: 627 VLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAI 677
>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
protein Y46G5A.6 protein.
Length = 1002
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 1 GYILFGIQHLPNKYYCFSIMLLFKFGLIILFSTFITSICFQILKETNSL 147
G FGI N ++ F M FKF L I + I FQ E+ ++
Sbjct: 926 GVYSFGILLFLNFFFHFENMHFFKFSLQIWRHFYFQPIFFQFFSESQAI 974
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 IITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVI 576
++ +STL Y+KF+ + LAKV L I A F + L A S I
Sbjct: 385 VLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAI 435
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 IITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVI 576
++ +STL Y+KF+ + LAKV L I A F + L A S I
Sbjct: 321 VLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAI 371
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 IITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVI 576
++ +STL Y+KF+ + LAKV L I A F + L A S I
Sbjct: 550 VLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAI 600
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 424 IITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMASTLPAGGSGVI 576
++ +STL Y+KF+ + LAKV L I A F + L A S I
Sbjct: 627 VLNLILSTLQYEKFVESQKLILAKVPILRINFAAPFDDITVDLNANNSVAI 677
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,211,748
Number of Sequences: 27780
Number of extensions: 368271
Number of successful extensions: 1089
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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