Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h16
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.48 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.84 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 528 IWDHGIDFTSRWFRRDLLLLYNNVSLQQFVGG 623
           ++D G   T  WFR+  L L++N SL++ + G
Sbjct: 15  LYDEGGKHTVHWFRKG-LRLHDNPSLREGLAG 45


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 100 FITSICFQILKETNSLDTGLAFLYIASGAIAGKIIYDRYQQI 225
           F+TS  F  L +TN +   +A ++  S  I   +I   Y QI
Sbjct: 193 FLTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQI 234


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 237 FINTKSKCDFLCKQDCFLFSLIYLFGLSDLCISI 338
           FI   S+ +F   QDC L +   LFG S   I +
Sbjct: 736 FIWDSSRLEFEAAQDCELVTAGELFGRSGYGIGL 769


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 591 YITEVNHAGTTCW 553
           Y T++N  G  CW
Sbjct: 312 YFTQINRNGIACW 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,871
Number of Sequences: 438
Number of extensions: 4430
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)