Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h16
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01930.2 68416.m00144 nodulin family protein similar to nodul...    32   0.39 
At3g01930.1 68416.m00143 nodulin family protein similar to nodul...    32   0.39 
At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing...    29   3.6  
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing...    28   6.3  
At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative...    27   8.3  
At1g11260.1 68414.m01289 glucose transporter (STP1) nearly ident...    27   8.3  

>At3g01930.2 68416.m00144 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 584

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 172 IASGAIAGKIIYDRYQQIQILGSLTPNPNVTSFANRIASFSVSFIYLGF-LIYAFLFLFK 348
           + SG IA  I YDR  + Q  GSL    +V      I  F  S I  GF LI A L +  
Sbjct: 509 VFSGLIASSI-YDREAERQAQGSLFNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMIL 567

Query: 349 VDNTFIIALNIF 384
           V  T  +  N++
Sbjct: 568 VQRTKPVYTNLY 579


>At3g01930.1 68416.m00143 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 471

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 172 IASGAIAGKIIYDRYQQIQILGSLTPNPNVTSFANRIASFSVSFIYLGF-LIYAFLFLFK 348
           + SG IA  I YDR  + Q  GSL    +V      I  F  S I  GF LI A L +  
Sbjct: 396 VFSGLIASSI-YDREAERQAQGSLFNPDDVLRCRGSICYFLTSLIMSGFCLIAAALSMIL 454

Query: 349 VDNTFIIALNIF 384
           V  T  +  N++
Sbjct: 455 VQRTKPVYTNLY 466


>At4g22990.1 68417.m03317 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 379 IFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFLI 510
           IF+   G   + +  ++ +YIS +F D+ +LL+ + +  V  L+
Sbjct: 549 IFLFCLGLTVLPVNLVVGSYISNMFEDRQILLVSEIMVCVGILL 592


>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
           protein weak similarity to SP|P51564 Tetracycline
           resistance protein, class H {Pasteurella multocida},
           SP|P39843 Multidrug resistance protein 2
           (Multidrug-efflux transporter 2) {Bacillus subtilis};
           contains Pfam profile PF03105: SPX domain
          Length = 707

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/64 (20%), Positives = 34/64 (53%)
 Frame = +1

Query: 370 ALNIFICGFGTLYIWIQCIITTYISTLFYDKFLLLLRQCLAKVSFLIIIVMAIFGTMAST 549
           +++IF+   G   + +  ++ +YIS +F D+ +LL  + +  +  ++   + I  T+   
Sbjct: 554 SVSIFLFCLGLTVLPVNLVVGSYISNMFEDRQILLASEIMVCIGIVLSFHVVIPYTVPQY 613

Query: 550 LPAG 561
           + +G
Sbjct: 614 VISG 617


>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 489

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +1

Query: 97  TFITSICFQILKETNSLDTGLAFLYIASGAIAGKI---IYDRYQQIQILGSLTPNPNVTS 267
           + I + C  +   T     G     +  G++A  I   +YD YQ I+++    P   VT 
Sbjct: 349 SLIANTCCFVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTK 408

Query: 268 F 270
           F
Sbjct: 409 F 409


>At1g11260.1 68414.m01289 glucose transporter (STP1) nearly
           identical to glucose transporter GB:P23586 SP|P23586
           from [Arabidopsis thaliana]
          Length = 522

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 256 NVTSFANRIASFSVSFIYLGFLIYAFLFLFKVDNTFIIALNIFI 387
           ++T   N I +F ++ I+L  L +    LF V   F++ ++IF+
Sbjct: 427 SITVSVNMIFTFIIAQIFLTMLCHLKFGLFLVFAFFVVVMSIFV 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,326
Number of Sequences: 28952
Number of extensions: 318724
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)