Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    34   0.022
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.62 
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    29   0.82 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    28   1.1  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   1.9  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   3.3  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    27   3.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.4  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   5.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   5.8  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   5.8  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    26   5.8  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   7.6  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   7.6  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 536 KMLANNVFSELRNFDYRAPSSILPPRPNVDSNAIL 432
           K L N VFS L  +D+   +++LP RP +D++ +L
Sbjct: 41  KSLLNEVFSALLGYDHTLWNTLLPERPTIDASFLL 75


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 265 TAVPNV-YMSNILRRSTVQSATKIWSQL*QSFWKITR 158
           T++PNV Y S +L      SA K+W +L ++  KIT+
Sbjct: 722 TSLPNVVYTSEVLLSKHNDSAFKVWPKLRKNIRKITK 758


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 517 TLLASILKVTRIVSPSTNPTSDSHHLNEQP 606
           T L++I K+T   SPS  P  DSH L++ P
Sbjct: 113 TTLSAIDKLTNDSSPSKPPHPDSHILDDDP 142


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -2

Query: 524 NNVFSELRNFDYRAPSSILPPRPNVDSNAILAQWRSVRDTTTDLEFEKL 378
           NN FS+ R+FD  +P+SI PP P + ++   +       TTT+ E   L
Sbjct: 389 NNSFSQ-RDFD--SPNSINPPSPLMSNHESASTEHFNSTTTTEKELSSL 434


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = -2

Query: 497 FDYRAPSSILPPRPNVDSNAILAQWRSVRDTTTDLEFEKLFTKRPTLNDLGMIVDG 330
           FD ++ S IL P  + D + +L+   ++RD   D++F +   ++P  + L +++DG
Sbjct: 59  FD-QSSSVILNPDTS-DPSIVLSSLETMRDLAHDIKFGQDVLEQPLCDQLFVLMDG 112


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/112 (20%), Positives = 46/112 (41%)
 Frame = -2

Query: 590 WWESLVGFVLGDTILVTFKMLANNVFSELRNFDYRAPSSILPPRPNVDSNAILAQWRSVR 411
           W ++ + F + +  ++ FK +  N F   R+      SS +   P++  + +L  W   +
Sbjct: 356 WGKTAIEFSVSEESILAFKGVKVNDFQG-RSLSMLT-SSTMSVDPDIQESHLLKGWYDGQ 413

Query: 410 DTTTDLEFEKLFTKRPTLNDLGMIVDGSPVQITYTAETGFTKTPITYNYRGT 255
                 EF K      TL+  G   +   +        G ++TP  ++ +GT
Sbjct: 414 GRGQ--EFAKHSVISSTLSTTGRSAERKNIAEVQAEHLGMSETPDYFSLKGT 463


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = -2

Query: 533 MLANNVFSELRNF-----DYR-APSSILPPRPNVDSNAILAQWRSVRDTTTDLE 390
           +L N   S+L NF     DY  A +S   P  +     +L+   SVR+T TD+E
Sbjct: 154 LLDNQPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVRETITDIE 207


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 263 RGTERVHVEHFEALDRSISDQDLESIITKFLEDY 162
           RGT R+ +E F ALD   + Q  E+ ++K  E+Y
Sbjct: 125 RGTSRIKLECFPALD--YARQSHETRVSKITENY 156


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 124 SKPASVAIPKMIA*SSKNFVIIDSKSWSL 210
           S P+S++I K I  S  N ++   +SWSL
Sbjct: 56  STPSSISIEKEIKISKGNVIVKAIRSWSL 84


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 463 GGSMLEGAL*SKLRNSLKTLLASILKVTRIVSPSTNPTSDSHHLNEQ----PPLNRF 621
           GGS+    L S    S    LA++L    + SP+ +PT      N +    PP+ RF
Sbjct: 267 GGSLHSDRLWSSFPVSYPLTLANVLAKDEVGSPTWSPTPSKSSTNLRQDGVPPILRF 323


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 499 ILITERLPAYYRHDPTWT 446
           IL  ERLP   R DP WT
Sbjct: 713 ILANERLPRSRRDDPYWT 730


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 493 SKLRNSLKTLLASILKVTRIVSPSTNPTSDSHHLN 597
           SK+RNS  T   + + +  ++SP   P   +HH N
Sbjct: 263 SKVRNSNSTKRRNFISLISMISP--RPNLSTHHFN 295


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 493 SKLRN---SLKTLLASIL-KVTRIVSPSTNPTSDSHHLNEQPPLNRFL 624
           S LRN   +L+   AS+L KV    + S+  +S+S      PPL RFL
Sbjct: 321 SNLRNLGLALEKSYASLLSKVANHTAKSSEDSSNSVEFVGDPPLERFL 368


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = -2

Query: 389 FEKLFTKRPTLNDLGMIVDG---SPVQITYTAETGFTKTPITYNYRGTERVHVEHFEALD 219
           F KLFT   TLN  G I +G   S  +     +    KT         + V  +    +D
Sbjct: 719 FAKLFTYNETLNAKGQIANGMNDSASETDLDIQPNH-KTSNNDQMGYDQSVSADDVPEVD 777

Query: 218 RSI-SDQDLESIITKFLEDYAIIFGIATDAG 129
            +I +++++ ++  + LE + I+F + TD G
Sbjct: 778 NTIVTEKNVSNLDQESLEKHPILFAL-TDEG 807


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 28  TRRVVLTNMRFKAGMRVVLIFFNMLLNPDISISKPASVAIPK 153
           T  + +TN +       + I    L++ + SISKP+  A P+
Sbjct: 71  TTLITITNSQCTGNYSTLTISSQPLIHTNTSISKPSQTATPQ 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,646
Number of Sequences: 5004
Number of extensions: 57866
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)