Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0009 - 57820-59457,59537-59650                                   30   2.0  
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...    29   4.5  
03_01_0241 - 1866625-1868082,1868892-1869080                           29   4.5  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    28   6.0  

>07_01_0009 - 57820-59457,59537-59650
          Length = 583

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 464 PRPNVDSNAILAQWRSVRDTTTDLEFEKLFTKRPTLNDLGMIVDGSP 324
           P P+ +   +L +W +   T  D+E +   T     N + + ++G P
Sbjct: 164 PAPHAEHTLLLGEWWNASATLVDVERQAFLTGGQPANSVALTINGMP 210


>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 404 TTDLEFEKLFTKRPTLNDLGMIVDGS-PVQITYTAETGFTKTPITYNYRGTERVHVEHFE 228
           T D  +EKL +  P     G +   S PV++T  AET ++   + + Y G    HV    
Sbjct: 621 TVDASYEKLLSSIPEFAGFGKLFKSSAPVELT-EAETEYSVNVVKHIYDG----HVVLQY 675

Query: 227 ALDRSISDQDLESII 183
               +I +Q LE ++
Sbjct: 676 NCTNTIPEQLLEEVV 690


>03_01_0241 - 1866625-1868082,1868892-1869080
          Length = 548

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = -2

Query: 395 LEFEKLFTKRPTLNDLGMIVDG-SPVQITYTAETGFTKTPITYNYRGTERVHVEHFEALD 219
           +++E L    P+  D+   VD   P+ + YT+ T      + YN+RG     +    A D
Sbjct: 157 VDYEDLVRDAPSEFDIRWPVDEMDPITLNYTSGTTSRPKGVVYNHRGAYLNTIATVLAYD 216

Query: 218 RSISDQDLESIITKFLEDYAIIFGIATDAGFEMLMSGF 105
            +     L ++       + + +G+A   G  + +  F
Sbjct: 217 ITAMPTYLWTVPMFHCNGWNLPWGVAMQGGTNICLRHF 254


>12_02_0870 -
           23852923-23853228,23853416-23853728,23853813-23853938,
           23854038-23854243,23854311-23854443,23854607-23854688,
           23854785-23854914,23855034-23855126,23855211-23855333,
           23855786-23855977,23858230-23858394,23858697-23858768,
           23858826-23858945,23859873-23859949,23860032-23860398,
           23860738-23861871
          Length = 1212

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +1

Query: 37  VVLTNMRFKAGMRVVLIFFNMLLNPDISISKPASVAIPKMIA*SSKNFVIIDSKSW--SL 210
           V++  + F +   V + +    LN +IS+S   ++          K+ V   S  W   L
Sbjct: 22  VIIATVIFASVTGVTIYYTVNQLNKNISLSLMKAIRARARKYKKLKDKVPASSHIWRKEL 81

Query: 211 IERSSASKCSTCTRSVPR*LYVIGVL 288
             RS   KC  C +SV    Y+ GV+
Sbjct: 82  GSRSKGLKCCVCLKSVSSPQYMGGVI 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,963
Number of Sequences: 37544
Number of extensions: 390935
Number of successful extensions: 1040
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)