Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                30   2.0  
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    28   6.0  
SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)                   28   8.0  
SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 490 TERLPAYYRHDPTWTPTQY*RNGAACAIPLQTWNLKNFLPKGQH 359
           T  +P+ Y H+   TPTQY  N    AIP Q  +  N +P   H
Sbjct: 342 TIAIPSQYHHNTLATPTQYHHN--TIAIPSQYHHDTNTIPSQYH 383



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 490 TERLPAYYRHDPTWTPTQY*RNGAACAIPLQTWNLKNFLPKGQH 359
           T  +P+ Y H+    P+QY RN    AIP Q  +  N +P   H
Sbjct: 298 TITIPSQYHHNTIAIPSQYHRN--TIAIPSQYHHDTNTIPTQYH 339


>SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 137

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 410 RARCAIALILRWSPRWVVAVVCWKALCNQNCAIR 511
           R  CA+ +I++ +P W V VVC+  + +    +R
Sbjct: 17  RGACALYVIIQSTPTWSVCVVCYHTVLSHEERVR 50


>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 416 RCAIALILRWSPR--WVVAVVCWKALCNQN 499
           R A+A +L W PR  W V + C +A CN+N
Sbjct: 560 RGALAPLLLWMPRKLWKVVLKCSQAGCNRN 589


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 660 RRIQRSLLSTIRQKSIQRRLFV*MVGIARRIR 565
           +R+++  L+ +RQK I+R LF+   GI + IR
Sbjct: 506 KRLRQEALALLRQKRIKRHLFI--TGIMKEIR 535


>SB_5625| Best HMM Match : DBR1 (HMM E-Value=1.1e-26)
          Length = 566

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 556 TRFLSLSKCWPTTFLANCAILITERLPAYYRHDPTW 449
           T+FL+L KC P         +   R P   R+DP W
Sbjct: 243 TKFLALDKCLPYRDFLQVLDVGEPRGPVELRYDPEW 278


>SB_2828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1555

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 51  HAFQGRNESSVNFFQHA 101
           H+FQG+ E ++N FQHA
Sbjct: 392 HSFQGKYEDAMNNFQHA 408



 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 51  HAFQGRNESSVNFFQHA 101
           H+FQG+ E ++N FQHA
Sbjct: 792 HSFQGKYEDAMNNFQHA 808


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,904,973
Number of Sequences: 59808
Number of extensions: 455528
Number of successful extensions: 1300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)