Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type  chlo...    29   2.3  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    29   2.3  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    29   2.3  
AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride ...    29   2.3  
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    29   3.0  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    29   4.0  
U97008-13|AAB52303.1|  335|Caenorhabditis elegans Serpentine rec...    28   5.3  
Z83129-4|CAB05642.1|  379|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical ...    28   7.0  
AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    27   9.3  

>U28943-17|AAK68292.2|  811|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform b protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 517 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 627
           T  A++ ++ R+ S S   T ++H+    PP N FLP
Sbjct: 317 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 353


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 517 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 627
           T  A++ ++ R+ S S   T ++H+    PP N FLP
Sbjct: 246 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 282


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 517 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 627
           T  A++ ++ R+ S S   T ++H+    PP N FLP
Sbjct: 246 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 282


>AF173172-1|AAF13165.1|  811|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 517 TLLASILKVTRIVSPSTNPTSDSHHLNEQPPLNRFLP 627
           T  A++ ++ R+ S S   T ++H+    PP N FLP
Sbjct: 317 TCSATLFRILRMFSVSAAVTVEAHYQTNFPPQNVFLP 353


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 94  NMLLNPDISISKPASVAIPKMIA*SSKNFVIIDSKSWSLIERSSASKC-STC--TRSVP 261
           N+ +N D+ + KP  V  P   A  +   V++DS S S    SS     STC  T+S P
Sbjct: 45  NLTVNQDVKLEKPEEVRRPTK-AEEASTVVLLDSSSTSSSSSSSNQNMRSTCEPTKSRP 102


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = -2

Query: 416 VRDTTTDLEFEKLFTKRPTLNDLGMIVDGSPVQITYTAETGFTKTPITYNYRGTERVHVE 237
           + D+  D E E+ F + P +N LG+    SP  +   A +G     +  ++ G+ R   +
Sbjct: 188 IADSDEDEEEEEFFDEMPVINSLGV---RSPTLVK--AYSG----AMADDFTGSVRTFND 238

Query: 236 HFEALDRSISDQDLESIITKFLEDYA 159
           H EA D+ ++++        FLE  A
Sbjct: 239 HLEASDKPVTERLKVRKFLTFLEGRA 264


>U97008-13|AAB52303.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein14 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 631 DSAEIYSTAAVRLDGGNRSSDSCWATRFLSLS 536
           DS +I   AA+ +DG N + +  WA  FL  S
Sbjct: 178 DSYDIAFVAALYIDGSNETKNKSWAGIFLLFS 209


>Z83129-4|CAB05642.1|  379|Caenorhabditis elegans Hypothetical
           protein W06G6.7 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 293 FTKTPITYNYRGTERVHVEHFEALDRSISDQDLESI 186
           FTK  +T NY   E   +E FEALDR+ S   L  +
Sbjct: 233 FTKENVTANYPH-EAQKLEIFEALDRTYSTSQLNEM 267


>AL021481-3|CAD90182.1|  459|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5b protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 186 N*LQILVAD*TVERLK--MFDMYTFGTAVIVCDRSFSKAGFGRVRDL 320
           N +Q LV +  V+ LK  M     FGTA +   RS  +AGFGR+ DL
Sbjct: 26  NEIQKLVDEKNVDALKARMDTRLVFGTAGV---RSPMQAGFGRLNDL 69


>AL021481-2|CAA16334.1|  595|Caenorhabditis elegans Hypothetical
           protein Y43F4B.5a protein.
          Length = 595

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 186 N*LQILVAD*TVERLK--MFDMYTFGTAVIVCDRSFSKAGFGRVRDL 320
           N +Q LV +  V+ LK  M     FGTA +   RS  +AGFGR+ DL
Sbjct: 26  NEIQKLVDEKNVDALKARMDTRLVFGTAGV---RSPMQAGFGRLNDL 69


>Z81521-5|CAE17802.1|  657|Caenorhabditis elegans Hypothetical
           protein F32A11.7 protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 293 FTKTPITYNYRGTERVHVEHFEALDRSISDQDLESI 186
           FTK  +T  Y    R  +E FE+LD++ +D+ L+ +
Sbjct: 379 FTKENVTEKYPHEAR-KIEMFESLDKTYTDEQLKEM 413


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 274 HTITAVPNVYMSNILRRSTVQSATKIWSQL*QSFWK--ITRSFSVLLRTLALRC*C 113
           H I +V N+Y + +  +S   SAT++ +Q     W     RS   LLRT+ L+  C
Sbjct: 166 HHIVSVKNLYAAMMNDKSITGSATQVATQF---LWSEIAERSGKCLLRTMRLKRAC 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,252,110
Number of Sequences: 27780
Number of extensions: 329566
Number of successful extensions: 993
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)