Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.2  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 566 VLGDTILVTFKMLANNVFSELRNFDYRAPSSI 471
           VLG   ++TF  LA+ V + L    Y   S I
Sbjct: 265 VLGTNTILTFMTLASKVENSLPKVSYIKASEI 296


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 424 HCANIALESTLGRGGSMLEGAL*SKLRNSLKTLLASILK 540
           + AN+A    L R  + L G   ++LRN+++ L  + +K
Sbjct: 654 YTANLAAFLVLERPKTKLTGINDARLRNTMENLTCATVK 692


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 566 VLGDTILVTFKMLANNVFSELRNFDYRAPSSILPP 462
           VLG+ +  +      NV+ +L NF + A S I  P
Sbjct: 344 VLGNIMEASILSPNQNVYGDLHNFGHVAISYIHDP 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,194
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)