Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h14
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33050.3 68417.m04705 calmodulin-binding family protein conta...    30   1.6  
At4g33050.2 68417.m04703 calmodulin-binding family protein conta...    30   1.6  
At4g33050.1 68417.m04704 calmodulin-binding family protein conta...    30   1.6  
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family...    30   1.6  
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    29   3.7  
At2g41705.1 68415.m05153 camphor resistance CrcB family protein ...    28   4.9  
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    28   4.9  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    28   6.5  
At5g21150.1 68418.m02526 PAZ domain-containing protein / piwi do...    28   6.5  
At4g09350.1 68417.m01544 DNAJ heat shock N-terminal domain-conta...    28   6.5  
At1g79140.1 68414.m09228 expressed protein                             28   6.5  
At1g37045.1 68414.m04623 hypothetical protein                          28   6.5  
At5g62650.1 68418.m07863 expressed protein                             27   8.6  
At3g07180.1 68416.m00855 GPI transamidase component PIG-S-relate...    27   8.6  

>At4g33050.3 68417.m04705 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 295

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 464 PRPNVDSNAILAQWRSVRDTTTDLEFEKLFTKRPTLNDL 348
           P+  ++ +     W   ++T TD +FE L TK+ T N L
Sbjct: 36  PKSTMERSLSFNSWEVPKETKTDSDFEVLETKKSTPNTL 74


>At4g33050.2 68417.m04703 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 526

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 464 PRPNVDSNAILAQWRSVRDTTTDLEFEKLFTKRPTLNDL 348
           P+  ++ +     W   ++T TD +FE L TK+ T N L
Sbjct: 36  PKSTMERSLSFNSWEVPKETKTDSDFEVLETKKSTPNTL 74


>At4g33050.1 68417.m04704 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 374

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 464 PRPNVDSNAILAQWRSVRDTTTDLEFEKLFTKRPTLNDL 348
           P+  ++ +     W   ++T TD +FE L TK+ T N L
Sbjct: 36  PKSTMERSLSFNSWEVPKETKTDSDFEVLETKKSTPNTL 74


>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 418

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/75 (29%), Positives = 30/75 (40%)
 Frame = -3

Query: 673 PNALKANSTKPTVDDSAEIYSTAAVRLDGGNRSSDSCWATRFLSLSKCWPTTFLANCAIL 494
           P AL     KP    SA ++   A  +  GN  S     T+FL+L KC P         +
Sbjct: 209 PAALLLEKLKPQYWFSAHLHCKFAAAVQHGNDGS----VTKFLALDKCLPGKKFLQIIEI 264

Query: 493 ITERLPAYYRHDPTW 449
            +E  P    +D  W
Sbjct: 265 ESEPGPFEVLYDEEW 279


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 224 LDRSISDQDLESIITKFLEDYAIIFGIATDAGFEMLMS--GFKSMLKKINTTLI 69
           LD S++D+DL+   ++F E  ++   +    GF   ++    +  L+K+N T+I
Sbjct: 313 LDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVI 366


>At2g41705.1 68415.m05153 camphor resistance CrcB family protein
           contains Pfam profile PF02537: CrcB-like protein
          Length = 461

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 176 FLEDYAIIFGIATDAGFEMLMSGFKSMLKKINTTLIPALKRMLVSTT 36
           FL  Y+II G+ T  GF+ L+    S   K +   +   +  +VS T
Sbjct: 254 FLTSYSIILGVETAKGFKWLLHRRASSEDKFHCLKVNTFQSHIVSLT 300


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 224 LDRSISDQDLESIITKFLEDYAIIFGIATDAGFEMLMS--GFKSMLKKINTTLI 69
           LD S++D+DL+    +F E  ++   +    GF   ++    +  L+K+N T+I
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVI 364


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7/homeotic
            protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
            similar to GP|4165087| Williams-Beuren syndrome deletion
            transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
            domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 131  GFEMLMSGFKSMLKKINTTLIPALKRMLVSTTRRVTARILG 9
            G ++L S     L ++ TTL  ALKR  +S+    T+ +LG
Sbjct: 1326 GMKLLSSSSHEDLYQVLTTLEAALKRDFLSSNFETTSELLG 1366


>At5g21150.1 68418.m02526 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|O04379 Argonaute
           protein (AGO1) {Arabidopsis thaliana}; contains Pfam
           profile: PF02170 PAZ (Piwi Argonaut and Zwille), PF02171
            Piwi domain
          Length = 896

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +1

Query: 97  MLLNPDISISKPASVAIPKMIA*SSKNFVIIDSKSWSLIERSSASKCSTCTRSVPR*LYV 276
           +++  D+S   P    IP + A       ++ S+ W LI     SK   C R+  R + +
Sbjct: 627 IIVGMDVSHGSPGQSDIPSIAA-------VVSSRQWPLI-----SKYKACVRTQSRKMEM 674

Query: 277 IGVLVKPVS 303
           I  L KPV+
Sbjct: 675 IDNLFKPVN 683


>At4g09350.1 68417.m01544 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q45552 Chaperone
           protein dnaJ {Bacillus stearothermophilus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 249

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 212 ISDQDLESIITKFLEDYAIIFGIATDAGFEMLMSGFKSMLKKI--NTTLIP 66
           +SD+    +I    + +    G++TDA  E + S ++ + K+   +TT +P
Sbjct: 91  LSDEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLP 141


>At1g79140.1 68414.m09228 expressed protein
          Length = 311

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = -2

Query: 548 LVTFKMLANNVFS---ELRNFDYRAPSSILPPRPNVDSNAILAQWRSVR---DTTTDLEF 387
           LV FK++ +N+ +   +L++F  +  + IL  RP  DS  ILA+   +    D   D++ 
Sbjct: 40  LVAFKVMRSNLNALNVDLQDFFVQLYNLILEYRPGRDSGVILAESLKIMLCDDRHQDMQK 99

Query: 386 EKLFTKR 366
              F KR
Sbjct: 100 AAAFVKR 106


>At1g37045.1 68414.m04623 hypothetical protein
          Length = 180

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 524 NNVFSELRNFDYRAPSSILPPRPNVDSNAILAQWRS 417
           NN FS  RNFD  +   +  P P  + +++   W +
Sbjct: 67  NNSFSFTRNFDLASYQDLTAPIPRWNESSLTTSWHA 102


>At5g62650.1 68418.m07863 expressed protein
          Length = 529

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 589 HLNEQPPLNRFLPNRRQ*ASLNSPLK 666
           H  E+P L +F+PN RQ  + N  LK
Sbjct: 178 HFKEKPHLFQFVPNERQVKAANKLLK 203


>At3g07180.1 68416.m00855 GPI transamidase component PIG-S-related
           similar to GPI transamidase component PIG-S
           (Phosphatidylinositol-glycan biosynthesis, class S
           protein) (Swiss-Prot:Q96S52) [Homo sapiens]
          Length = 599

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 215 SISDQDLESIITKFLEDYAIIFGIATDAGFEMLMSGFK 102
           +IS QDLE I+  FL  +  +FG  ++A +   +  +K
Sbjct: 411 TISLQDLEQIVEIFLGQFRQLFGFKSEAKYTTGLGTYK 448


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,403
Number of Sequences: 28952
Number of extensions: 304059
Number of successful extensions: 902
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)