Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h13
(676 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36241 Cluster: 60S ribosomal protein L19; n=141; Eukar... 219 7e-56
UniRef50_Q95L19 Cluster: Ribosomal protein L19; n=4; Eukaryota|R... 192 5e-48
UniRef50_P84098 Cluster: 60S ribosomal protein L19; n=53; Eukary... 192 5e-48
UniRef50_Q5DEB4 Cluster: Ribosomal protein L19; n=6; Eukaryota|R... 166 5e-40
UniRef50_Q4QJ39 Cluster: 60S ribosomal protein L19, putative; n=... 150 3e-35
UniRef50_UPI0000DA4672 Cluster: PREDICTED: similar to ribosomal ... 131 1e-29
UniRef50_Q014R4 Cluster: Ribosomal protein L19; n=2; Eukaryota|R... 128 9e-29
UniRef50_Q98RT9 Cluster: 60S ribosomal protein L19; n=1; Guillar... 121 1e-26
UniRef50_Q7QT85 Cluster: Ribosomal protein L19; n=1; Giardia lam... 109 6e-23
UniRef50_Q8SRP5 Cluster: 60S RIBOSOMAL PROTEIN L19; n=1; Encepha... 102 7e-21
UniRef50_Q6QI82 Cluster: LRRGT00126; n=3; Rattus norvegicus|Rep:... 99 5e-20
UniRef50_Q9V1V3 Cluster: 50S ribosomal protein L19e; n=6; Archae... 97 3e-19
UniRef50_P54043 Cluster: 50S ribosomal protein L19e; n=12; Eurya... 82 1e-14
UniRef50_Q74N10 Cluster: Ribosomal protein L19; n=3; Archaea|Rep... 81 3e-14
UniRef50_UPI0001552F33 Cluster: PREDICTED: hypothetical protein;... 55 5e-13
UniRef50_Q673R0 Cluster: Ribosomal protein L19; n=2; environment... 66 7e-10
UniRef50_Q6L1A9 Cluster: Large subunit ribosomal protein L19E; n... 66 1e-09
UniRef50_Q7QT86 Cluster: GLP_72_19704_20255; n=1; Giardia lambli... 65 1e-09
UniRef50_A3H8Q7 Cluster: Ribosomal protein L19e; n=1; Caldivirga... 62 1e-08
UniRef50_Q9YF93 Cluster: 50S ribosomal protein L19e; n=2; Desulf... 62 1e-08
UniRef50_Q6QI77 Cluster: LRRG00131; n=1; Rattus norvegicus|Rep: ... 61 3e-08
UniRef50_Q9UX89 Cluster: 50S ribosomal protein L19e; n=4; Sulfol... 56 6e-07
UniRef50_Q680Q9 Cluster: Ribosomal protein L19; n=3; Arabidopsis... 55 2e-06
UniRef50_Q6QI84 Cluster: LRRG00124; n=5; Eukaryota|Rep: LRRG0012... 54 4e-06
UniRef50_UPI00005A22A8 Cluster: PREDICTED: similar to ribosomal ... 53 7e-06
UniRef50_Q6X9Y8 Cluster: Ribosomal protein L19; n=1; Equus cabal... 52 1e-05
UniRef50_Q8ZVV8 Cluster: Ribosomal protein L19; n=4; Pyrobaculum... 51 2e-05
UniRef50_A7Q820 Cluster: Chromosome undetermined scaffold_62, wh... 48 2e-04
UniRef50_Q3LVV0 Cluster: Ribosomal protein L19; n=1; Bigelowiell... 46 6e-04
UniRef50_A0RUF8 Cluster: Ribosomal protein L19E; n=1; Cenarchaeu... 46 6e-04
UniRef50_A7DRM7 Cluster: Ribosomal protein L19e; n=1; Candidatus... 45 0.002
UniRef50_Q6QI83 Cluster: LRRG00125; n=1; Rattus norvegicus|Rep: ... 38 0.17
UniRef50_Q18GG7 Cluster: Ribosomal protein L19.eR; n=5; Archaea|... 36 0.68
UniRef50_Q9HPB6 Cluster: 50S ribosomal protein L19e; n=12; Eurya... 36 0.90
UniRef50_A2YPT1 Cluster: Putative uncharacterized protein; n=3; ... 33 6.3
UniRef50_Q8DFA7 Cluster: Flagellar motor protein MotB; n=31; Gam... 33 8.4
UniRef50_Q0FWV5 Cluster: Parallel beta-helix repeat; n=3; Proteo... 33 8.4
UniRef50_A3QGM1 Cluster: Tetratricopeptide TPR_2 repeat protein ... 33 8.4
>UniRef50_P36241 Cluster: 60S ribosomal protein L19; n=141;
Eukaryota|Rep: 60S ribosomal protein L19 - Drosophila
melanogaster (Fruit fly)
Length = 203
Score = 219 bits (534), Expect = 7e-56
Identities = 109/172 (63%), Positives = 118/172 (68%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NEINEIANTNSRQNIRK+IKDGL+IKKPV VHSR RVRKNTEARRKGRHCGFGKR+GTAN
Sbjct: 27 NEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTAN 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP K LW +KKIDRHLYH LYMK KGNVFKNKRVLMEYIH+KK
Sbjct: 87 ARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKK 146
Query: 481 AEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQTFAREDEAALTA 636
AEK R+KML+DQ L+ A+EDE A A
Sbjct: 147 AEKQRSKMLADQAEARRQKVREARKRREERIATKKQELIALHAKEDEIAAKA 198
Score = 56.4 bits (130), Expect = 6e-07
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
MSSLKLQKRLAASV+RCGKKKVWLDP
Sbjct: 1 MSSLKLQKRLAASVLRCGKKKVWLDP 26
>UniRef50_Q95L19 Cluster: Ribosomal protein L19; n=4; Eukaryota|Rep:
Ribosomal protein L19 - Sus scrofa (Pig)
Length = 153
Score = 192 bits (469), Expect = 5e-48
Identities = 89/132 (67%), Positives = 103/132 (78%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR RKNT ARRKGRH G GKR+GTAN
Sbjct: 19 NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 78
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP+K W +KKIDRH+YHSLY+K KGNVFKNKR+LME+IH+ K
Sbjct: 79 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 138
Query: 481 AEKARTKMLSDQ 516
A+KAR K+L+DQ
Sbjct: 139 ADKARKKLLADQ 150
Score = 40.7 bits (91), Expect = 0.032
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +2
Query: 68 RLAASVMRCGKKKVWLDP 121
RLA+SV+RCGKKKVWLDP
Sbjct: 1 RLASSVLRCGKKKVWLDP 18
>UniRef50_P84098 Cluster: 60S ribosomal protein L19; n=53;
Eukaryota|Rep: 60S ribosomal protein L19 - Homo sapiens
(Human)
Length = 196
Score = 192 bits (469), Expect = 5e-48
Identities = 89/132 (67%), Positives = 103/132 (78%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR RKNT ARRKGRH G GKR+GTAN
Sbjct: 27 NETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTAN 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP+K W +KKIDRH+YHSLY+K KGNVFKNKR+LME+IH+ K
Sbjct: 87 ARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLK 146
Query: 481 AEKARTKMLSDQ 516
A+KAR K+L+DQ
Sbjct: 147 ADKARKKLLADQ 158
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
MS L+LQKRLA+SV+RCGKKKVWLDP
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDP 26
>UniRef50_Q5DEB4 Cluster: Ribosomal protein L19; n=6; Eukaryota|Rep:
Ribosomal protein L19 - Schistosoma japonicum (Blood
fluke)
Length = 287
Score = 166 bits (403), Expect = 5e-40
Identities = 79/132 (59%), Positives = 93/132 (70%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE I N NSR+ IRK+ KD L+I+KPV VHSR+R RKN ARRKGRH G GKR+GTA+
Sbjct: 27 NETTTIQNANSRKMIRKLYKDNLIIRKPVTVHSRSRCRKNLIARRKGRHTGTGKRKGTAD 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMPQK LW A KID+HLYH LY + KGN FKNKRVL+++IH+KK
Sbjct: 87 ARMPQKVLWMRRMRVLRRLLKRYREAHKIDKHLYHLLYQQCKGNQFKNKRVLIDHIHKKK 146
Query: 481 AEKARTKMLSDQ 516
AE+ R K LSDQ
Sbjct: 147 AERLRAKQLSDQ 158
Score = 46.0 bits (104), Expect = 8e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDPMKSMRSQ 142
MS+L+ QKRLA++V CGKKK+WLDP ++ Q
Sbjct: 1 MSNLRTQKRLASAVFGCGKKKIWLDPNETTTIQ 33
>UniRef50_Q4QJ39 Cluster: 60S ribosomal protein L19, putative; n=16;
cellular organisms|Rep: 60S ribosomal protein L19,
putative - Leishmania major
Length = 267
Score = 150 bits (364), Expect = 3e-35
Identities = 71/132 (53%), Positives = 90/132 (68%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE EI N NSR+++RK+IKDG +I+KPV VHSRAR RK EA+ GRH G G+R G+
Sbjct: 47 NEAVEIQNANSRKSVRKLIKDGFIIRKPVKVHSRARWRKMKEAKDMGRHNGVGRREGSRE 106
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP KELW KKIDRH+Y LYM+AKGNVF+NKR L+E+IH+ K
Sbjct: 107 ARMPSKELWMRRLRILRRLLRKYRADKKIDRHVYRDLYMRAKGNVFRNKRNLVEHIHKIK 166
Query: 481 AEKARTKMLSDQ 516
EK + + L++Q
Sbjct: 167 NEKKKERQLAEQ 178
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDPMKSMRSQ 142
M SLKLQ RLA+S++ CG+ +VWLDP +++ Q
Sbjct: 21 MVSLKLQARLASSILGCGRARVWLDPNEAVEIQ 53
>UniRef50_UPI0000DA4672 Cluster: PREDICTED: similar to ribosomal
protein L19; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein L19 - Rattus norvegicus
Length = 303
Score = 131 bits (317), Expect = 1e-29
Identities = 67/132 (50%), Positives = 86/132 (65%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE N+IAN NS Q IRK+I+DGL+I KPV VHS+A KNT KGRH GK +GTAN
Sbjct: 27 NETNKIANANSCQLIRKLIEDGLIIWKPVTVHSQAHCEKNT---LKGRHMVIGKGKGTAN 83
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
+P++ W +KKID H+ HSLY++ K NVFKN+ +LME IH+ K
Sbjct: 84 IWVPERVTWMRRMSILHRLLRRYCESKKIDCHMCHSLYLRVKRNVFKNQWILMEQIHKPK 143
Query: 481 AEKARTKMLSDQ 516
A+KA K+L+DQ
Sbjct: 144 ADKACKKLLADQ 155
Score = 44.0 bits (99), Expect = 0.003
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
MS L LQKRLA+SV+ CGKKKV LDP
Sbjct: 1 MSMLSLQKRLASSVLHCGKKKVQLDP 26
>UniRef50_Q014R4 Cluster: Ribosomal protein L19; n=2; Eukaryota|Rep:
Ribosomal protein L19 - Ostreococcus tauri
Length = 213
Score = 128 bits (310), Expect = 9e-29
Identities = 59/102 (57%), Positives = 70/102 (68%)
Frame = +1
Query: 211 VHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKID 390
+HSRAR + A+R GRH G+GKRRGT AR+P K LW AKKID
Sbjct: 77 IHSRARTAREQAAKRLGRHTGYGKRRGTREARLPTKVLWLRRHRVLRRLLSKYRDAKKID 136
Query: 391 RHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
+H+YHS+Y+K KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 137 KHMYHSMYLKCKGNVFKNKRVLMEAIHKSKAEKAREKSLADQ 178
Score = 46.4 bits (105), Expect = 6e-04
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M SLKLQKRLAAS++ CG +K+W+DP
Sbjct: 1 MVSLKLQKRLAASILNCGVRKIWMDP 26
>UniRef50_Q98RT9 Cluster: 60S ribosomal protein L19; n=1; Guillardia
theta|Rep: 60S ribosomal protein L19 - Guillardia theta
(Cryptomonas phi)
Length = 190
Score = 121 bits (292), Expect = 1e-26
Identities = 57/135 (42%), Positives = 82/135 (60%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
+ NE I T+SR +IRK+I+DG ++KK HSR R+R E + GRH G GKR+G
Sbjct: 24 IDPNETKNILFTDSRNSIRKLIRDGFILKKKDKNHSRNRIRSRKEEIKLGRHEGLGKRKG 83
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH 471
+ N+R K +W + K++RHLY SLY+K+KGNVFKNK++L E+IH
Sbjct: 84 SKNSRYSIKLIWIIRIRVMRNLLKRLRNSSKLNRHLYRSLYLKSKGNVFKNKKILTEFIH 143
Query: 472 RKKAEKARTKMLSDQ 516
+ K E+ R + D+
Sbjct: 144 KAKNEQKRKEEFLDK 158
Score = 40.7 bits (91), Expect = 0.032
Identities = 13/26 (50%), Positives = 22/26 (84%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
MSS+K+ K +A+ ++ CGK+K+W+DP
Sbjct: 1 MSSVKMHKTIASKLLNCGKRKIWIDP 26
>UniRef50_Q7QT85 Cluster: Ribosomal protein L19; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein L19 - Giardia
lamblia ATCC 50803
Length = 196
Score = 109 bits (262), Expect = 6e-23
Identities = 55/127 (43%), Positives = 73/127 (57%)
Frame = +1
Query: 136 IANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 315
I +SR+ IR +I+ ++ K + SR R+R A+R GRH G GKRRGT ARMP
Sbjct: 32 IEQASSREAIRSLIESKIIAKLDIKGSSRGRIRARHAAKRLGRHSGHGKRRGTREARMPS 91
Query: 316 KELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKAR 495
K LW +KIDRHLY +LY KAKGN+FKNKRVL+E+I + E+
Sbjct: 92 KTLWIQRQRVLRRLLSRYRDDEKIDRHLYETLYAKAKGNMFKNKRVLLEHIVGMQKEQEL 151
Query: 496 TKMLSDQ 516
K ++
Sbjct: 152 EKKKKEE 158
Score = 38.3 bits (85), Expect = 0.17
Identities = 15/26 (57%), Positives = 23/26 (88%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M++L+LQKRLAA V++CGK++V +P
Sbjct: 1 MANLRLQKRLAADVLKCGKRRVRFNP 26
>UniRef50_Q8SRP5 Cluster: 60S RIBOSOMAL PROTEIN L19; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L19
- Encephalitozoon cuniculi
Length = 171
Score = 102 bits (245), Expect = 7e-21
Identities = 50/133 (37%), Positives = 80/133 (60%)
Frame = +1
Query: 118 SNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 297
+NEI + ++R+ I+++IKD ++I K SR R RK EA++KGRH G GKR GTA
Sbjct: 26 NNEIERLNGASTREQIKQLIKDNVIIMKQDKHTSRGRCRKRLEAKKKGRHMGTGKRFGTA 85
Query: 298 NARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRK 477
NARMPQK++W +I + + Y +AKG++FK++ + + I ++
Sbjct: 86 NARMPQKKIWMKKIRAMRAMLKEMRANGEITKEDFRVFYKQAKGHLFKHRFHMKDCIIKR 145
Query: 478 KAEKARTKMLSDQ 516
KA++ R K L++Q
Sbjct: 146 KADEQRAKELAEQ 158
Score = 35.1 bits (77), Expect = 1.6
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLD 118
MS+ + +RLA+ ++ CGKKK+WLD
Sbjct: 1 MSNEERVRRLASDILNCGKKKLWLD 25
>UniRef50_Q6QI82 Cluster: LRRGT00126; n=3; Rattus norvegicus|Rep:
LRRGT00126 - Rattus norvegicus (Rat)
Length = 632
Score = 99 bits (238), Expect = 5e-20
Identities = 49/111 (44%), Positives = 68/111 (61%)
Frame = +1
Query: 184 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXX 363
GL+I+KPV VHS +R+ +G+ G + GTANARM +K W
Sbjct: 503 GLIIRKPVTVHSPGSLREKHLGLMEGQAYGHREEEGTANARMSEKLTWMRRMRILHRLLR 562
Query: 364 XXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
+KKIDR +YHSL +K KGNVFKNK L+++IH+ KA++A K+L+DQ
Sbjct: 563 RYRESKKIDRRMYHSLDLKVKGNVFKNKWSLVDHIHKLKADRAPKKLLADQ 613
>UniRef50_Q9V1V3 Cluster: 50S ribosomal protein L19e; n=6;
Archaea|Rep: 50S ribosomal protein L19e - Pyrococcus
abyssi
Length = 151
Score = 97.5 bits (232), Expect = 3e-19
Identities = 48/128 (37%), Positives = 71/128 (55%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
+ ++++A+ +R++IR++IK+G++ KKPV SR R R E ++KGRH G G R+G
Sbjct: 24 IDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKG 83
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH 471
ARM +KELW KKIDR Y LY++AKG FK+K L ++
Sbjct: 84 KKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLE 143
Query: 472 RKKAEKAR 495
K R
Sbjct: 144 EHNLLKKR 151
Score = 40.3 bits (90), Expect = 0.042
Identities = 12/26 (46%), Positives = 23/26 (88%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M +LK+Q+R+AA +++CG+ ++W+DP
Sbjct: 1 MKTLKMQRRVAAELLKCGENRIWIDP 26
>UniRef50_P54043 Cluster: 50S ribosomal protein L19e; n=12;
Euryarchaeota|Rep: 50S ribosomal protein L19e -
Methanococcus jannaschii
Length = 151
Score = 82.2 bits (194), Expect = 1e-14
Identities = 44/126 (34%), Positives = 64/126 (50%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
+ +++ + S+ +IR +IK+G++ KK S ARV+K E R+KGR G G RRG
Sbjct: 26 IDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRG 85
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH 471
A AR P KE W + KIDR +Y LY AKG F+++ L Y+
Sbjct: 86 AAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRSRSHLFLYMR 145
Query: 472 RKKAEK 489
+ K
Sbjct: 146 EHELLK 151
Score = 34.7 bits (76), Expect = 2.1
Identities = 10/23 (43%), Positives = 20/23 (86%)
Frame = +2
Query: 53 LKLQKRLAASVMRCGKKKVWLDP 121
+ +Q+R+AA +++CG ++VW+DP
Sbjct: 6 VSVQRRMAAEILKCGIERVWIDP 28
>UniRef50_Q74N10 Cluster: Ribosomal protein L19; n=3; Archaea|Rep:
Ribosomal protein L19 - Nanoarchaeum equitans
Length = 147
Score = 80.6 bits (190), Expect = 3e-14
Identities = 41/122 (33%), Positives = 62/122 (50%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
+ N + E+A ++ +IR++IK G++ K P+ SR R R+ E ++KGR G G R+G
Sbjct: 23 IDPNHLKEVAEALTKDDIRELIKRGIIKKLPIEGQSRKRARELHEKKKKGRRRGPGSRKG 82
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIH 471
AR K W K ID Y LY K KGN+FK++ L+ Y+
Sbjct: 83 KRTARADPKRQWINKVRAQRKLLKELKEKKIIDNKTYWDLYKKVKGNLFKSRSHLLLYLK 142
Query: 472 RK 477
+K
Sbjct: 143 QK 144
>UniRef50_UPI0001552F33 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 183
Score = 55.2 bits (127), Expect(2) = 5e-13
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +1
Query: 385 IDRHLYHSLYMKAKGNVFK--NKRVLMEYIHRKKAEKARTKMLSDQ 516
ID HLY SLY+K KGNV K +KR+ E+I + KA+ A+ K+LSDQ
Sbjct: 108 IDYHLYRSLYLKVKGNVLKTIDKRIFKEHIRKLKADSAQQKLLSDQ 153
Score = 41.5 bits (93), Expect(2) = 5e-13
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 294
+E +EI N +S Q IRK+ +DGL+I+K T ARR+G H G KR+GT
Sbjct: 61 SETSEIDNASSCQQIRKLSEDGLIIQKSA-----------TLARRRGWHMGIRKRKGT 107
Score = 34.3 bits (75), Expect = 2.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 56 KLQKRLAASVMRCGKKKVWLDPMKS 130
+L R + +RCGK+KVWLDP ++
Sbjct: 39 ELPMRFVSGFLRCGKRKVWLDPSET 63
>UniRef50_Q673R0 Cluster: Ribosomal protein L19; n=2; environmental
samples|Rep: Ribosomal protein L19 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 158
Score = 66.1 bits (154), Expect = 7e-10
Identities = 31/111 (27%), Positives = 56/111 (50%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
V +++++++ ++++R++I +G++ +P SR+R RK + KGR G G R+G
Sbjct: 29 VDPQKLDDVSDAVQKEDVRRLIDEGVIKARPFVGTSRSRARKAAAQKAKGRRSGQGSRKG 88
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKN 444
+ANAR P+K W I Y Y KAKG +++
Sbjct: 89 SANARNPRKSRWMRTIRAQRKELKGMREDDSISSSEYRYYYRKAKGGSYRS 139
>UniRef50_Q6L1A9 Cluster: Large subunit ribosomal protein L19E; n=4;
Thermoplasmatales|Rep: Large subunit ribosomal protein
L19E - Picrophilus torridus
Length = 158
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/119 (30%), Positives = 56/119 (47%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRG 291
+ +N I+++ + SR+++RK+I ++ KK +S R++K E KGR G G RG
Sbjct: 23 IDTNSIDQVLDATSREDVRKLIDLHIIQKKQKKGNSNYRLKKRIEQLAKGRRRGEGSVRG 82
Query: 292 TANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYI 468
T AR P+K W T KID+ Y Y K F ++ L +I
Sbjct: 83 TKYARFPRKRRWISRIRALRRELRELKTNNKIDKKTYRRYYRIIKSGSFVSRAQLRNHI 141
>UniRef50_Q7QT86 Cluster: GLP_72_19704_20255; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_72_19704_20255 - Giardia lamblia
ATCC 50803
Length = 183
Score = 65.3 bits (152), Expect = 1e-09
Identities = 41/106 (38%), Positives = 62/106 (58%)
Frame = -2
Query: 582 LGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHVE*V 403
+GGN + LA LL +AA L L+ L LL L DVL E+ L+LEH+TL L +E +
Sbjct: 51 VGGNLLCSLLASLLCLLAALLKLLLLLLLELLLLLHSNDVLQENALILEHVTLSLSIEGL 110
Query: 402 V*MPVNLLGSSVLQEQFS*NPLSLYP*FLLWHTRIGSTSSLTKATV 265
+ +P++L +V +Q + + L+L P L HT + T++LT V
Sbjct: 111 IKVPIDLFVVTVPAQQATEDTLALNPESLRRHTSLPGTAALTVTAV 156
>UniRef50_A3H8Q7 Cluster: Ribosomal protein L19e; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L19e -
Caldivirga maquilingensis IC-167
Length = 158
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 109 VVGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRR 288
V+ + ++ +R ++R ++K+GL+ KP +SR R R E R+ GR G G RR
Sbjct: 19 VIKQEALEQLEEAITRNDVRSLMKEGLIEVKPRKRNSRGRWRITHEKRKSGRRRGRGSRR 78
Query: 289 GTANAR-MPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 465
GT AR KE+W ID+ + +LY AKG F++ L Y
Sbjct: 79 GTRKARGAVGKEVWVPRIRRIRRFLNTLKHRGVIDKATWRNLYRMAKGGYFESLAHLRTY 138
Query: 466 I 468
+
Sbjct: 139 M 139
>UniRef50_Q9YF93 Cluster: 50S ribosomal protein L19e; n=2;
Desulfurococcaceae|Rep: 50S ribosomal protein L19e -
Aeropyrum pernix
Length = 155
Score = 62.1 bits (144), Expect = 1e-08
Identities = 35/112 (31%), Positives = 52/112 (46%)
Frame = +1
Query: 133 EIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMP 312
EI ++ ++R +IK G++ P ++ + RRKGR G G+R+G A AR+
Sbjct: 32 EIEGAVTKADVRALIKRGVIKVLPEKGNAGHASKVRHLQRRKGRRRGMGRRKGVATARLD 91
Query: 313 QKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYI 468
KE W + IDR Y LYM AKG F++ L Y+
Sbjct: 92 PKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLYMLAKGGTFRDLASLKRYM 143
>UniRef50_Q6QI77 Cluster: LRRG00131; n=1; Rattus norvegicus|Rep:
LRRG00131 - Rattus norvegicus (Rat)
Length = 180
Score = 60.9 bits (141), Expect = 3e-08
Identities = 43/127 (33%), Positives = 65/127 (51%)
Frame = -2
Query: 492 GLLSLLPVDVLHEHTLVLEHITLRLHVE*VV*MPVNLLGSSVLQEQFS*NPLSLYP*FLL 313
G+ LL + +L E + L + V+ V+ V LL V E+ NP +P LL
Sbjct: 43 GMDHLLVITLLAPGNAFYEKLFLHMQVQAVIRTIVTLLRFLVSPEKPVQNPHPSHPGPLL 102
Query: 312 WHTRIGSTSSLTKATVTTLSTCLCVFADTGAGVDCYRFLDDETILDHLTDVLSGVGVCDL 133
+ +GST L A + L + VF+ G+D ++ LDD+ I D ++D+L GVG+
Sbjct: 103 GYQNVGSTLPLPYAHMPALPSSQGVFSVVSPGMDGHKILDDQRIFDQISDLLMGVGIG-- 160
Query: 132 IDFIGSN 112
DFIG N
Sbjct: 161 -DFIGLN 166
>UniRef50_Q9UX89 Cluster: 50S ribosomal protein L19e; n=4;
Sulfolobaceae|Rep: 50S ribosomal protein L19e -
Sulfolobus solfataricus
Length = 151
Score = 56.4 bits (130), Expect = 6e-07
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Frame = +1
Query: 127 INEIANTNSRQNIRKMIKDG-LVIKKPVAVHSRARVRKNTEARR-KGRHCGFGKRRGTAN 300
I ++ ++ +R IR +IKDG +++ K V + S R+++ + R K G R+G
Sbjct: 29 IEDVQSSLTRDEIRNLIKDGKIIVLKKVGI-SGGRLKERRKKRSLKSEGKKSGSRKGKKG 87
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFK 441
AR K++W K IDRH Y LY+K KG +K
Sbjct: 88 ARANSKQMWVKRVRKIRAYLKWLRDHKVIDRHTYRELYLKTKGGNYK 134
>UniRef50_Q680Q9 Cluster: Ribosomal protein L19; n=3; Arabidopsis
thaliana|Rep: Ribosomal protein L19 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 114
Score = 54.8 bits (126), Expect = 2e-06
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 205 VAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKK 384
V++H +R R ARRK RH G+GK A R+ K L KK
Sbjct: 2 VSIHFHSRSR----ARRKCRHTGYGKDTMEALRRI-MKRLTRRLKMLKRLLKKFCWN-KK 55
Query: 385 IDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 489
ID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 56 IDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 91
>UniRef50_Q6QI84 Cluster: LRRG00124; n=5; Eukaryota|Rep: LRRG00124 -
Rattus norvegicus (Rat)
Length = 487
Score = 53.6 bits (123), Expect = 4e-06
Identities = 39/107 (36%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = -3
Query: 527 RASAWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAF-M*SEWYRCLSIFLAVLYFRSNF 351
+A AWS S F+ L L +PF + Y +++ L RS
Sbjct: 53 QAPAWSASSFLAGLVCLQFVDVLHENPLALEYIPFDLQIQGVIYMAVNLLRFQLSLRSRH 112
Query: 350 LRTLCLCTHSSFCGIRALAVPLLLPKPQ*RPFLRASVFLRTRAREWT 210
R L L +F GI+ALAVP L P PF R+ VF R RAREWT
Sbjct: 113 -RILILLIQVTFSGIQALAVPFLFPMLICLPFRRSKVFFRHRAREWT 158
>UniRef50_UPI00005A22A8 Cluster: PREDICTED: similar to ribosomal
protein L19; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L19 - Canis familiaris
Length = 169
Score = 52.8 bits (121), Expect = 7e-06
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 373 TAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
+A K+ H+ HSLY KAKG VFKNK +L+E+ ++ KA+K K+L+ Q
Sbjct: 58 SAPKVALHMCHSLYRKAKGYVFKNKWILVEHNYKLKADKVPQKLLAAQ 105
>UniRef50_Q6X9Y8 Cluster: Ribosomal protein L19; n=1; Equus
caballus|Rep: Ribosomal protein L19 - Equus caballus
(Horse)
Length = 81
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +2
Query: 413 T*RRRVMCSRTSVCSWSTSTGXXXXXXXXXXXXXXXXPAAIK*RRHASAARNVLPPRRRN 592
T +RR MCS+T SW+TST PA ++ R+HASAA++ PR+R
Sbjct: 1 TRKRRAMCSKTRGFSWNTSTSRRQTRLARSFWRTRLRPAGLRPRKHASAAKSGSRPRKRK 60
Query: 593 CCRPSLEKTKPR 628
R S + +PR
Sbjct: 61 SSRLSPRRKRPR 72
>UniRef50_Q8ZVV8 Cluster: Ribosomal protein L19; n=4;
Pyrobaculum|Rep: Ribosomal protein L19 - Pyrobaculum
aerophilum
Length = 147
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/113 (27%), Positives = 50/113 (44%)
Frame = +1
Query: 151 SRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWX 330
++ ++R +I GL+ +P SR R R ++KGR G G R+G R ++E W
Sbjct: 34 TKDDVRALIDQGLIWAEPERGVSRGRWRVRHIKKKKGRRRGHGSRKG---PRTDEEEAWK 90
Query: 331 XXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEK 489
K++ ++ LY KGN F++ L YI+ K K
Sbjct: 91 EKVRAMRRFLNTLKRKGKLEPRVWRQLYRMVKGNYFRDLDHLKTYINEHKLAK 143
>UniRef50_A7Q820 Cluster: Chromosome undetermined scaffold_62, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_62, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 430
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/42 (45%), Positives = 30/42 (71%)
Frame = +1
Query: 112 VGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRK 237
+ NE+NEI+ N RQNI K++KD +I+KP +HS++ R+
Sbjct: 34 IDPNEVNEISMVNFRQNISKLVKDDFIIRKPTKIHSQSVHRR 75
>UniRef50_Q3LVV0 Cluster: Ribosomal protein L19; n=1; Bigelowiella
natans|Rep: Ribosomal protein L19 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 150
Score = 46.4 bits (105), Expect = 6e-04
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 136 IANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQ 315
+ + N+R+ I + K ++IKK + S R + ++ G G G+R+GT NAR
Sbjct: 31 LKSENNRKKIIDLFKKRIIIKKTIKGVSSYRKKLRKAKKQSGLKRGIGRRKGTKNARKKY 90
Query: 316 KELWXXXXXXXXXXXXXXXTAKKIDRH--LYHSLYM--KAKGNVFKNKRVLMEYI 468
K LW K+ + L + ++ K KGN F + + L+E++
Sbjct: 91 KILWIHKIRNQRKLLKMFRNKKQFLNYKILLNKVFFFSKIKGNFFSSTKHLLEHM 145
>UniRef50_A0RUF8 Cluster: Ribosomal protein L19E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L19E - Cenarchaeum
symbiosum
Length = 150
Score = 46.4 bits (105), Expect = 6e-04
Identities = 31/122 (25%), Positives = 56/122 (45%)
Frame = +1
Query: 127 INEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANAR 306
+++IA+ +R +IR +I + KPV+ SR R + + K R G ++G AR
Sbjct: 30 LDDIADAITRNDIRSLITANTIKIKPVSGTSRGRAQHKRRQKAK-RGSKAGSKQGRMGAR 88
Query: 307 MPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAE 486
+ +K+++ K I + +LY K GN +NK L + KA+
Sbjct: 89 VGKKQVYVKKVRALRYLLAVFKDRKDITNPEFWALYKKVGGNTVRNKAHLHLLVDEIKAK 148
Query: 487 KA 492
++
Sbjct: 149 RS 150
>UniRef50_A7DRM7 Cluster: Ribosomal protein L19e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein
L19e - Candidatus Nitrosopumilus maritimus SCM1
Length = 151
Score = 44.8 bits (101), Expect = 0.002
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +1
Query: 118 SNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 297
++ + ++A+ +R+NIR +I + SR R + +A+R R G ++G
Sbjct: 27 ADHLTDVADAITRENIRSLITANTIKIDSFTGTSRGRAQTK-KAQRNKRGTKQGSKQGRK 85
Query: 298 NARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNK---RVLMEYI 468
AR+ +KE++ K++ + +LY K GN +NK R LME I
Sbjct: 86 GARVGKKEIYVAKVRSLRRLLKIAKDRKELTNPEFWALYKKVGGNTVRNKAHLRQLMEEI 145
Query: 469 HRKK 480
K+
Sbjct: 146 VAKR 149
>UniRef50_Q6QI83 Cluster: LRRG00125; n=1; Rattus norvegicus|Rep:
LRRG00125 - Rattus norvegicus (Rat)
Length = 123
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -2
Query: 204 RFLDDETILDHLTDVLSGVGVCDLIDFIGSNHTFFLPHRITEAASLFCS 58
R DD+ I D L D+L+GVG+ D + IG T A+LFC+
Sbjct: 5 RLPDDQPIFDQLPDLLTGVGIGDFVGLIGVQPDLRFTTARTLEANLFCT 53
>UniRef50_Q18GG7 Cluster: Ribosomal protein L19.eR; n=5;
Archaea|Rep: Ribosomal protein L19.eR - Haloquadratum
walsbyi (strain DSM 16790)
Length = 153
Score = 36.3 bits (80), Expect = 0.68
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M+ LK Q+R+AA V+ GK ++W DP
Sbjct: 1 MTDLKAQRRMAADVLSVGKSRIWFDP 26
>UniRef50_Q9HPB6 Cluster: 50S ribosomal protein L19e; n=12;
Euryarchaeota|Rep: 50S ribosomal protein L19e -
Halobacterium salinarium (Halobacterium halobium)
Length = 149
Score = 35.9 bits (79), Expect = 0.90
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
MS L QKRLAA V+ G+ +VW DP
Sbjct: 1 MSDLSAQKRLAADVLDVGENRVWFDP 26
>UniRef50_A2YPT1 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 55
Score = 33.1 bits (72), Expect = 6.3
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 415 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>UniRef50_Q8DFA7 Cluster: Flagellar motor protein MotB; n=31;
Gammaproteobacteria|Rep: Flagellar motor protein MotB -
Vibrio vulnificus
Length = 300
Score = 32.7 bits (71), Expect = 8.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 534 IAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 415
I G S++A+ RPG P+DV+ + T+ + TL H
Sbjct: 51 IPKGTSIIAQEFRPGRPEPTPIDVIMQQTIDITQQTLEFH 90
>UniRef50_Q0FWV5 Cluster: Parallel beta-helix repeat; n=3;
Proteobacteria|Rep: Parallel beta-helix repeat -
Roseovarius sp. HTCC2601
Length = 10077
Score = 32.7 bits (71), Expect = 8.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 240 VFADTGAGVDCYRFLDDETILDHLTDVLSGVGVCDLIDFI 121
+ + GAG D RFLD T+ H T VL+G G DL++ +
Sbjct: 7542 ILVEGGAGADSIRFLDATTMTGHAT-VLAGAG-DDLVEIV 7579
>UniRef50_A3QGM1 Cluster: Tetratricopeptide TPR_2 repeat protein
precursor; n=1; Shewanella loihica PV-4|Rep:
Tetratricopeptide TPR_2 repeat protein precursor -
Shewanella loihica (strain BAA-1088 / PV-4)
Length = 718
Score = 32.7 bits (71), Expect = 8.4
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = -2
Query: 588 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHI 430
L LG +T+L A A L+ ++ GL+ A +RPGL+ LL ++ ++ H + E I
Sbjct: 553 LNLGNDTYLEATARLMDTLSRGLAGEAYLIRPGLI-LLTLNEVNAHQALQERI 604
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,907,184
Number of Sequences: 1657284
Number of extensions: 13965277
Number of successful extensions: 39787
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 38322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39750
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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