Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h13
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 160 2e-40
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 160 2e-40
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.46
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 3.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 4.3
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 4.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 10.0
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 160 bits (388), Expect = 2e-40
Identities = 73/132 (55%), Positives = 95/132 (71%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA
Sbjct: 27 NEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAE 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+I R K
Sbjct: 87 ARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAK 146
Query: 481 AEKARTKMLSDQ 516
AE RTK++ +Q
Sbjct: 147 AEANRTKLIQEQ 158
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/26 (69%), Positives = 25/26 (96%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M++L+ QKRLAASV++CGK+KVW+DP
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDP 26
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 160 bits (388), Expect = 2e-40
Identities = 73/132 (55%), Positives = 95/132 (71%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A+R GRH G+GKR+GTA
Sbjct: 27 NEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAE 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMP +W + KID+HLYH+LY++AKGN FK+KR L+E+I R K
Sbjct: 87 ARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAK 146
Query: 481 AEKARTKMLSDQ 516
AE RTK++ +Q
Sbjct: 147 AEANRTKLIQEQ 158
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/26 (69%), Positives = 25/26 (96%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M++L+ QKRLAASV++CGK+KVW+DP
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDP 26
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 245 SVFLRTRAREWTATGFLMTRPSLIILRMFC 156
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 591 FLLLGGNT-----FLAALACLLYFIAAGL 520
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 159 LSGVGVCDLIDFIGSNHTFFLPHR 88
L+ +G ++IDF N FFL HR
Sbjct: 94 LNSIGSYEMIDFKQINSEFFLSHR 117
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 322 VPSVAYAHWQYLFSYQS 272
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 482 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 390
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 157 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 273
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,463
Number of Sequences: 5004
Number of extensions: 55965
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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