Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h13
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 176 2e-44
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 176 2e-44
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.21
03_02_0050 + 5272471-5274861 30 1.5
11_04_0443 - 17808897-17809110,17809169-17813652 30 1.9
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.4
04_04_1687 - 35365766-35366356,35367137-35368135 29 4.5
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 4.5
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 29 4.5
03_01_0553 - 4123634-4123690,4123756-4124469 28 5.9
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 7.8
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 176 bits (428), Expect = 2e-44
Identities = 80/132 (60%), Positives = 97/132 (73%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT
Sbjct: 27 NEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 481 AEKARTKMLSDQ 516
AEKAR K LSDQ
Sbjct: 147 AEKAREKTLSDQ 158
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M SLKLQKRLA+SV++CGK KVWLDP
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDP 26
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 176 bits (428), Expect = 2e-44
Identities = 80/132 (60%), Positives = 97/132 (73%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA++KGRH G+GKRRGT
Sbjct: 27 NEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTRE 86
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 481 AEKARTKMLSDQ 516
AEKAR K LSDQ
Sbjct: 147 AEKAREKTLSDQ 158
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 44 MSSLKLQKRLAASVMRCGKKKVWLDP 121
M SLKLQKRLAASV++CGK KVWLDP
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDP 26
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 415 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 516
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 588 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 430
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 1 ILILSCVRWISPCQD 45
+LIL CVR++SPC D
Sbjct: 884 VLILKCVRYVSPCDD 898
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 127 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 192 HQETCSSPLPRPCPQKHR 245
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 184 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 297
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/70 (20%), Positives = 35/70 (50%)
Frame = +1
Query: 40 QDEFPQAAEEACSLCYAMW*KEGVVGSNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHS 219
+D P A+E C++ +++ +G+ + + I N N Q +R + V ++
Sbjct: 1095 EDHCPDQADEECNILKSLFDAQGIHSAINHDAIMNANDDQKLRLEAEATQVAQRAAEALR 1154
Query: 220 RARVRKNTEA 249
++R+ ++ E+
Sbjct: 1155 QSRMLRSHES 1164
>03_01_0553 - 4123634-4123690,4123756-4124469
Length = 256
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = -1
Query: 166 GCSVWSWCLR----SH*FHWIQPHLLFTTSHNRGCKPL 65
G S W+W S FH P LLF +H+R PL
Sbjct: 90 GDSKWTWARNLPALSRHFHVYAPDLLFFGAHSRSASPL 127
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 178 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 306
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,803,351
Number of Sequences: 37544
Number of extensions: 425044
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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