Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h13
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 2e-53
SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34) 33 0.21
SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08) 30 2.0
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 29 4.5
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013) 29 4.5
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 6.0
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 6.0
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0) 28 7.9
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 206 bits (502), Expect = 2e-53
Identities = 101/169 (59%), Positives = 115/169 (68%)
Frame = +1
Query: 121 NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 300
NE NEIAN NSRQN+RK+IKDGL+IKKP VHSRARVRK EAR KGRH G GKR+GTAN
Sbjct: 55 NECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTAN 114
Query: 301 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 480
ARMPQK +W AKKID H+YHSLYMK+KGNVFKNKRVLMEYIH+KK
Sbjct: 115 ARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKK 174
Query: 481 AEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQTFAREDEAA 627
AEKAR+K+LSDQ +L +A+E+EAA
Sbjct: 175 AEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDMLSAYAKEEEAA 223
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = +2
Query: 35 RVRMSSLKLQKRLAASVMRCGKKKVWLDP 121
+V + +L+LQKRLAAS+++CGKKK+WLDP
Sbjct: 26 KVHVGTLRLQKRLAASLLKCGKKKIWLDP 54
>SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 28 ISPCQDEFPQAAEEACSLCYAMW*KEGVVGSNEINEIANTNSRQNIRKMIKDGLVI 195
+SP QD F + + + +C W + V+GS+E++++ + K DG V+
Sbjct: 114 LSPLQDRFRETSLKFDGICNLEWRVDYVLGSSELDDVKEPEIQLKFNKGSPDGEVV 169
>SB_16856| Best HMM Match : HCaRG (HMM E-Value=1.1e-34)
Length = 196
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 28 ISPCQDEFPQAAEEACSLCYAMW*KEGVVGSNEINEIANTNSRQNIRKMIKDGLVI 195
+SP QD F + + + +C W + V+GS+E++++ + K DG V+
Sbjct: 114 LSPLQDRFRETSLKFDGICNLEWRVDYVLGSSELDDVKEPEIQLKFNKGSPDGEVV 169
>SB_40057| Best HMM Match : zf-B_box (HMM E-Value=1.4e-08)
Length = 584
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 228 TGAGVDCYRFLDDETILDHL----TDVLSGVGVCDLIDFIGSN-HTFFLPHRITEAASLF 64
TG DC F+ + I H T +G+ + D SN + + PH I E +LF
Sbjct: 107 TGRCTDCSEFMCEFCINSHRRLLRTKQHKIIGIKEATDKGTSNCKSHYCPHHIGERLALF 166
Query: 63 CSLRELILTR 34
CS+ + ++ R
Sbjct: 167 CSICDELICR 176
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 220 RARVRKNTEARRKGRHCGFGKRRGTANAR 306
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 349 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 227
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 349 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 227
++ + F+P V + W++ ++ H+DDPF V C H
Sbjct: 72 IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114
>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
Length = 427
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 79 GCKPLLQLEGTHPDTVRSNAHKKEL 5
GCKP L HPDT + A+ + L
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAYNEAL 360
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 591 FLLLGGNTFLAALAC 547
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 575 PPRRRNCCRPSLEKTKPRLPLRSK 646
PP +N +P ++KTKP PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 397 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 296
D + S Q C FLEP VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225
>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1702
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 198 LDDETILDHLTDVLSGVGVCDLIDFIGSNHTFFL-PHRITEAASL 67
LDDET + DVL + V + F+ ++ FL R+++A L
Sbjct: 1093 LDDETFVKRAVDVLVAICVVFALSFVPASFVVFLVSERVSKAKHL 1137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,738
Number of Sequences: 59808
Number of extensions: 457415
Number of successful extensions: 1327
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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