Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h12
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.96 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 466 AQQVQSQAQPHHVAGRLHARGANERDRLHYD 558
           +Q ++ Q +     G LH+  +   DRLHY+
Sbjct: 686 SQYIREQTESDDKEGYLHSVVSGALDRLHYE 716


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 709 MFYLLCIIKKQYILCITKALCWSPNA*TLDDI 614
           + + LCI+    + C    LC       LDDI
Sbjct: 7   LLFTLCIVSYMMVRCDDITLCLKQENLNLDDI 38


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 257 AQCPPCGWPAAPFRGARFRN 198
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 257 AQCPPCGWPAAPFRGARFRN 198
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 257 AQCPPCGWPAAPFRGARFRN 198
           A   PC W A P++G    N
Sbjct: 296 ANTKPCTWAARPWQGYMTNN 315


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 617 HIKIFIARCANCSCA 573
           H  ++  RCANC+ A
Sbjct: 39  HSNVYQYRCANCTYA 53


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +1

Query: 445 QSKGSHTAQQVQSQAQPHH 501
           Q +  H AQ +    Q HH
Sbjct: 793 QQRHQHAAQMIYGHQQSHH 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,944
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)