Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h12
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35695.1 68418.m04268 hypothetical protein 31 0.78
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote... 30 1.4
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote... 30 1.4
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 30 1.8
At1g09970.2 68414.m01124 leucine-rich repeat transmembrane prote... 30 1.8
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote... 30 1.8
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 3.1
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 29 4.1
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family... 28 7.2
At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3) ... 27 9.6
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr... 27 9.6
>At5g35695.1 68418.m04268 hypothetical protein
Length = 211
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -2
Query: 265 HVLRNVRHAVGQLRRFAARVFAILPSRFSVASSHNHFVGKQNERSVGFRQICVGHRQFLR 86
H L N+RH LR R+F I SRF++ S F K + G C FLR
Sbjct: 87 HELFNLRHV--SLRNVIERIFGIFKSRFAIFKSAPPFSYK---KQAGLVLTCAALHNFLR 141
Query: 85 Q 83
+
Sbjct: 142 K 142
>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
kinase, putative identical to putative kinase-like
protein TMKL1 precursor GB:P33543 from [Arabidopsis
thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
Length = 674
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 263 VIAKPSNPQ-LCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNV 439
V+ +P+ P C +L V D+G N+F+ P+ + + +K L + +F VP + V
Sbjct: 187 VLPEPALPNSTCGNLQVLDLGGNKFSGEFPEFITRFKGVKSLDLSSNVFEG-LVPEGLGV 245
Query: 440 LNKVKEAIPRNKF 478
L + N F
Sbjct: 246 LELESLNLSHNNF 258
>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
1 GB:AAC49810 (putative receptor protein kinase);
contains Pfam profiles: PF00560 Leucine Rich Repeat (17
repeats), PF00069 Eukaryotic protein kinase domain
Length = 1106
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +2
Query: 275 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVK 454
P C +L V ++ N+F P + SLK L + FS D +N+ N V
Sbjct: 269 PGQVSNCQNLNVLNLWGNKFTGNIPAEIGSISSLKGLYLGNNTFSRDIPETLLNLTNLVF 328
Query: 455 EAIPRNKF 478
+ RNKF
Sbjct: 329 LDLSRNKF 336
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 302 LAVCDVGNNEFAFLRPQKRSL-GRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKF 478
L + ++ NN PQ ++ G ++ G+ + FSS N + ++ + IP NK
Sbjct: 479 LRLLNLENNNLVGPLPQSLNITGLEVRITGNPCLSFSSISCNNVSSTIDTPQVTIPINKK 538
Query: 479 KAKHNRITLL 508
+ K NRI +L
Sbjct: 539 QRKQNRIAIL 548
>At1g09970.2 68414.m01124 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 977
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 275 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 451
PS+ + C SL D+GNN F+ P+ SL + L+ L N+ FS + S+ N + V
Sbjct: 114 PSDLKNCTSLKYLDLGNNLFSGAFPEFSSLNQ-LQFLYLNNSAFSGVFPWKSLRNATSLV 172
Query: 452 KEAIPRNKFKA 484
++ N F A
Sbjct: 173 VLSLGDNPFDA 183
>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
kinase, putative Similar to A. thaliana receptor-like
protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene isoform
contains a TG acceptor site at intron.
Length = 976
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 275 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 451
PS+ + C SL D+GNN F+ P+ SL + L+ L N+ FS + S+ N + V
Sbjct: 114 PSDLKNCTSLKYLDLGNNLFSGAFPEFSSLNQ-LQFLYLNNSAFSGVFPWKSLRNATSLV 172
Query: 452 KEAIPRNKFKA 484
++ N F A
Sbjct: 173 VLSLGDNPFDA 183
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 374 LKRLGSNDVIFSSDYVPNSM-NVLNKVKEAIPRNKFK-AKHNRITLLEDYTREELMNVIG 547
+K G D+ S DY+ + N L +E + F + NRIT E+Y L + G
Sbjct: 74 IKTPGMFDLSVSEDYISKEIINCLTLAEEGVHAVLFVLSMKNRITQEEEYALNTLQRIFG 133
Query: 548 STMTD 562
S + +
Sbjct: 134 SKILE 138
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +2
Query: 284 PQLCHSLAVCDV--GNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSD---YVPNSMNVLNK 448
P + + + CD GNN F R + + ++KRL +ND + D P V+ K
Sbjct: 663 PMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVM-K 721
Query: 449 VKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTM 556
+KE + R ++ +E + +E +I ST+
Sbjct: 722 IKEVLDR--LDMTEVKVGSVEQFQGQEKQVIIISTV 755
>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
protein
Length = 635
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -3
Query: 360 DRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 181
DRF +A S +S T+ +HS LLG A ++S+ +C + +AF Q +A
Sbjct: 175 DRFATSSSA-SATSSSSTSSPFHSSSLLGFAPAVTSVSSAPTPACGPT-QAFGQPTQAFG 232
Query: 180 AS 175
S
Sbjct: 233 LS 234
>At1g75410.1 68414.m08760 BEL1-like homeodomain 3 protein (BLH3)
identical to BEL1-like homeodomain 3 (GI:13877515)
[Arabidopsis thaliana]
Length = 524
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/83 (25%), Positives = 39/83 (46%)
Frame = +2
Query: 314 DVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 493
DV NNE F+ P + SND+ F + S+++ N+++ A+ + F+ +
Sbjct: 46 DVRNNEMVFIPPTSDVAVNGNVTVSSNDLSFHGGGL--SLSLGNQIQSAVSVSPFQYHYQ 103
Query: 494 RITLLEDYTREELMNVIGSTMTD 562
++ Y N+ STM+D
Sbjct: 104 NLSNQLSYN-----NLNPSTMSD 121
>At1g17230.1 68414.m02099 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1133
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 275 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLG-SNDVIFSSDYVPNSMNVLNKV 451
P + LC SL V D+ N F + P + ++ +LK+L + +F S +P + L+ +
Sbjct: 108 PQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLYLCENYLFGS--IPRQIGNLSSL 165
Query: 452 KEAI 463
+E +
Sbjct: 166 QELV 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,947
Number of Sequences: 28952
Number of extensions: 295129
Number of successful extensions: 831
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -