Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h09
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0394 - 17261008-17262476,17262554-17262743 29 3.0
08_01_0083 - 604175-605776 28 4.0
08_01_0082 - 588269-588434,590800-591653 28 4.0
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 4.0
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 5.3
12_01_0827 - 7662180-7662192,7662451-7662764 27 7.0
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 7.0
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 27 9.2
01_07_0315 - 42692539-42693260,42693357-42693609 27 9.2
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665... 27 9.2
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 423 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 337
KP RR +PS S VW V LL+V C
Sbjct: 4 KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32
>08_01_0083 - 604175-605776
Length = 533
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 207 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 320
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 207 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 320
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 326 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 418
+++EH T S+ HT S+ ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 226 LKNGAGVSNHMWHRLKNDDGDDKPCLN 146
L G G +NH H +DD DD P L+
Sbjct: 56 LMRGGGAANHHHHDDDDDDDDDVPWLH 82
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 324 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 416
PK Q T++ +AR +T + ++RSD ACPR
Sbjct: 25 PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 227 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 328
P + A R T A+VD A EDPG + A E
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -3
Query: 301 WIFCMCEV-YPGGVCNPSFCVCV*YRLKNGAGVSNHMWHRLKNDDGDDKPCLNCVIYVAV 125
WI M + PGG CN V Y+L G V + L + G K +C++ +
Sbjct: 47 WIDRMLDYNVPGGKCNRGLSVVDSYKLLKGTNVLSQEDMFLASTLGCFKLTFSCLMISWM 106
Query: 124 VFTLLIFFTLCI 89
+ TL + ++ I
Sbjct: 107 ILTLDVVGSIAI 118
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 307 GSWIFCMCEVYPGGVC-NPSF 248
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>01_06_0903 +
32862551-32864752,32865341-32865535,32866219-32866523,
32866664-32866849,32867137-32867314,32867548-32867574
Length = 1030
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 159 LSSPSSFFNRCHIWFDTPAPFFSRYHTQT 245
LSSPS +R FDT PF R HTQ+
Sbjct: 626 LSSPSPRHSRAS--FDTAMPFTPRRHTQS 652
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,257
Number of Sequences: 37544
Number of extensions: 254279
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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