Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h09
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)                    29   3.1  
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)                    29   3.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              27   7.2  
SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)                       27   7.2  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        27   9.5  

>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
          Length = 467

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +3

Query: 159 LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQN 338
           + S   + N+ H   D+     +  +T+T+ +G Q   G   H  ++Q      PP+ Q+
Sbjct: 202 MQSVVCYNNKLHKATDSMKLGANAINTETKPVGAQNMAG--GH-PRVQHATDHAPPRRQS 258

Query: 339 TLLLTARHSTHPTVAKERSDFVA 407
           T          PT++ E+SD  A
Sbjct: 259 TPAKVHAEGAAPTLSGEKSDHTA 281


>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
          Length = 699

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 226 LKNGAGVSNHMWHRLKNDDGDDKPCLNCVIYVA 128
           + NG  ++NH    +    G +K C+N V YVA
Sbjct: 63  MNNGRRIANHDMQGISFASGGEKDCVNMVGYVA 95


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 2    KVMENIRKHSNKNLNDQDELNIYLGVQSSNAKRK 103
            +++E+ ++ S  ++ D DE      +QSSN KRK
Sbjct: 2487 EMVESFKRRSTTSMGDLDENEYVAELQSSNLKRK 2520


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 237 TQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK 386
           T TQ    Q+P    +H   + +P    PPK Q+    T+ H+T  T  +
Sbjct: 718 TTTQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHNTSTTSHHNTTKTTTQ 767


>SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)
          Length = 202

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 347 INSQTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKIL 457
           I SQ+ + SD++E T +    P FG RL +   C I+
Sbjct: 90  IESQSENESDNAEETCKILATPPFGSRLRRCGYCAIM 126


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 75  EFNRRMQSVKNINKVKTTAT*ITQFKHGLSSPSSFFNRCH 194
           E       +  INKV+  +T +  +  G S PS   NR H
Sbjct: 654 EITANKDGIDRINKVRFGSTLVVGYVGGWSKPSYISNRIH 693


>SB_13176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -3

Query: 166 DDKPCLNCVIYVAVVFTLLIFFT 98
           DD+P ++ VIY+A + +++++ T
Sbjct: 468 DDRPSMSFVIYIAYLSSMIVYMT 490


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 338 HATINSQTFHTSDSSEGTKRFRRLPSF 418
           H T   + F T D  +G++ F R+P+F
Sbjct: 482 HCTQKRRGFQTCDKPQGSQSFPRIPTF 508


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 270 PG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKER 392
           PG  S   + Q+P +  PP+ +  L L+ RH T  + A+ER
Sbjct: 44  PGQLSQQSQSQQPQM-MPPQQKRELTLSVRHLTQMSSAEER 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,735
Number of Sequences: 59808
Number of extensions: 299229
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)