Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h09
         (525 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 175 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 68
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 175 DDGDDKPCLNCVIYVAVVFTLLIFFTLCIRRLNSQI 68
           DD D K  + C+   A V   LIF  L   RL S I
Sbjct: 213 DDEDTKVFVTCIFIWAYVIP-LIFIILFYSRLLSSI 247


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 319 LSMNGSW--IFCMCEVYPGGVCNPSFCVC 239
           LS+N S   I C+ +   GG C    C+C
Sbjct: 74  LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 69  IWEFNRRMQSVKNINKVK 122
           IW  NRRM+  K +  VK
Sbjct: 54  IWFQNRRMKLKKELRAVK 71


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 211 GVSNHMWHRLKNDDGDDKP 155
           G+S   WH+ +   G  KP
Sbjct: 2   GISRDHWHKRRATGGKRKP 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,253
Number of Sequences: 438
Number of extensions: 2988
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)