Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h09
         (525 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29280.1 68417.m04186 expressed protein ; expression supporte...    29   1.9  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    29   2.5  
At3g32030.1 68416.m04070 terpene synthase/cyclase family protein...    28   3.3  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    28   4.4  
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    27   7.7  
At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laev...    27   7.7  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    27   7.7  
At2g09910.1 68415.m01029 hypothetical protein                          27   7.7  

>At4g29280.1 68417.m04186 expressed protein ; expression supported
           by MPSS
          Length = 77

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 292 CMCEVYPGGVCNPSFCVCV*YRLKNGAG 209
           C   ++PG  C+PS CV   Y   NG G
Sbjct: 31  CTIIIHPGSPCDPSDCVQYCYAEYNGVG 58


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 379 TVGCVECLAVNSSVFCNFGGLSMNGSWIFC 290
           T+ C  C  + ++V C+ GG S NGS ++C
Sbjct: 784 TITC-SCGRITATVPCDAGGRSANGSNVYC 812


>At3g32030.1 68416.m04070 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397 terpene synthase family
          Length = 604

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 512 IYLQNSNKNKLFELSGLSLKSCRHDFVTVESQTRA 408
           ++L+ S    LF    LSLK  +HDFV V++ T++
Sbjct: 21  LFLKTSQS--LFPRPSLSLKPMKHDFVCVKATTKS 53


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 206 HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINS 355
           HAG  L PV+ A+++AR   A ++D    E   A     A+ T+   + S
Sbjct: 229 HAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGS 278


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 497 SNKNKLFELSGLSLKSCRHDFVTVESQTRAG 405
           S+K + F LS +SLK   H+F T ES + AG
Sbjct: 223 SSKKRSF-LSRVSLKRNGHEFSTAESSSAAG 252


>At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus
          laevis, EMBL:XLU66003
          Length = 225

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 60 NSSWSFKFLLLCFLIFS 10
          ++SW F+  LLCF+ FS
Sbjct: 7  SASWDFRGFLLCFIFFS 23


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 174 SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 269
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 168 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 199


>At2g09910.1 68415.m01029 hypothetical protein
          Length = 985

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 174 SFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTP 269
           ++F +CH+WF  P+   S  + +       TP
Sbjct: 169 AYFRQCHLWFPIPSLIISFLNRRRMAFSQLTP 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,388,917
Number of Sequences: 28952
Number of extensions: 204971
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)