Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h08
         (507 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   202   5e-54
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   3.4  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  202 bits (493), Expect = 5e-54
 Identities = 96/139 (69%), Positives = 115/139 (82%), Gaps = 1/139 (0%)
 Frame = +3

Query: 21  MADQTE-KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 197
           MADQ   +AFQKQ  + LNRK   ++K +R H ++GLGFKTP+EAI GTYIDKKCPFTG+
Sbjct: 1   MADQQNIRAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGH 60

Query: 198 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 377
           +SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEKR+RNM +HLSPCFRDVE GDI
Sbjct: 61  ISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRNRNMRLHLSPCFRDVEAGDI 118

Query: 378 VTIGECRPLSKTVRFNVLK 434
           VT+GECRPLSKTVRFNVLK
Sbjct: 119 VTLGECRPLSKTVRFNVLK 137


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 224  GEDAAADRNVASEGTLLVNVGT 159
            GED   D+   S+GTLL  +GT
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGT 1288


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,120
Number of Sequences: 2352
Number of extensions: 9870
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45668772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)