Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h08
         (507 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...   229   2e-60
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...   229   2e-60
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...   214   5e-56
AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p pro...    31   0.68 
AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-P...    31   0.68 
AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-P...    31   0.68 
M31162-1|AAA28859.1|  448|Drosophila melanogaster protein ( D.me...    28   6.3  
AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p pro...    28   6.3  
AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p pro...    28   6.3  
AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA...    28   6.3  

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score =  229 bits (559), Expect = 2e-60
 Identities = 112/142 (78%), Positives = 124/142 (87%), Gaps = 3/142 (2%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 191
           MADQ E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1   MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60

Query: 192 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 371
           G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61  GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120

Query: 372 DIVTIGECRPLSKTVRFNVLKV 437
           DIVTIGECRPLSKTVRFNVLKV
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score =  229 bits (559), Expect = 2e-60
 Identities = 112/142 (78%), Positives = 124/142 (87%), Gaps = 3/142 (2%)
 Frame = +3

Query: 21  MADQTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 191
           MADQ E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+T
Sbjct: 1   MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWT 60

Query: 192 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 371
           G+V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE G
Sbjct: 61  GDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHG 120

Query: 372 DIVTIGECRPLSKTVRFNVLKV 437
           DIVTIGECRPLSKTVRFNVLKV
Sbjct: 121 DIVTIGECRPLSKTVRFNVLKV 142


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score =  214 bits (523), Expect = 5e-56
 Identities = 104/141 (73%), Positives = 120/141 (85%), Gaps = 2/141 (1%)
 Frame = +3

Query: 21  MADQ-TEKAFQKQ-ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 194
           MADQ TE++F+KQ A V + RK    +K  R ++ +GLGF+ P EAI+GTYIDKKCP+TG
Sbjct: 1   MADQQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGTYIDKKCPWTG 60

Query: 195 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 374
           +V IRGRILTGVV+K KMQRTIVIRRDYLH++ KY+RFEKRHRNMSVH SP FRDVE GD
Sbjct: 61  DVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGD 120

Query: 375 IVTIGECRPLSKTVRFNVLKV 437
           IVTIGECRPLSKTVRFNVLKV
Sbjct: 121 IVTIGECRPLSKTVRFNVLKV 141


>AY122128-1|AAM52640.1| 1188|Drosophila melanogaster GH22749p
           protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 201 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 341
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>AE014296-2482|AAN11790.1| 1188|Drosophila melanogaster CG12316-PB,
           isoform B protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 201 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 341
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>AE014296-2481|AAF49660.1| 1188|Drosophila melanogaster CG12316-PA,
           isoform A protein.
          Length = 1188

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 201 SIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHL 341
           S++ RI+    + M+  R++ I+  Y HYLPK+       R +  HL
Sbjct: 252 SVKERIVQFAEKFMRPSRSLAIKSVYAHYLPKFTDQNAATRTILNHL 298


>M31162-1|AAA28859.1|  448|Drosophila melanogaster protein (
           D.melanogaster U1 70Ksmall nuclear ribonucleoprotein
           gene, complete cds. ).
          Length = 448

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 14  KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 193
           K+     RE  S    R  ++ER   E G  S  +   R  + +  D   +  + V   +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382

Query: 194 QRFDXXXXXXXXXSEDEDAENYRDPP 271
             FD          +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408


>AY089622-1|AAL90360.1|  448|Drosophila melanogaster RE35772p
           protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 14  KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 193
           K+     RE  S    R  ++ER   E G  S  +   R  + +  D   +  + V   +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382

Query: 194 QRFDXXXXXXXXXSEDEDAENYRDPP 271
             FD          +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408


>AY061501-1|AAL29049.1|  448|Drosophila melanogaster LD46049p
           protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 14  KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 193
           K+     RE  S    R  ++ER   E G  S  +   R  + +  D   +  + V   +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382

Query: 194 QRFDXXXXXXXXXSEDEDAENYRDPP 271
             FD          +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408


>AE014134-1210|AAF52471.1|  448|Drosophila melanogaster CG8749-PA
           protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/86 (26%), Positives = 33/86 (38%)
 Frame = +2

Query: 14  KQNGGSDRESVSETGHRFPEQERWHEEEGHASP*ECWFRLQNSQRGD*GYLH*QEVSLHW 193
           K+     RE  S    R  ++ER   E G  S  +   R  + +  D   +  + V   +
Sbjct: 323 KKKRSKSRERESSRERRERKRERRDRERGTGSGGDVKERKPDFRDMDVIKIKEEPVDDGY 382

Query: 194 QRFDXXXXXXXXXSEDEDAENYRDPP 271
             FD          +DED E YR PP
Sbjct: 383 PTFDYQNATIKREIDDEDEEKYRPPP 408


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,026,165
Number of Sequences: 53049
Number of extensions: 448020
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)