Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h07
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    20   9.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   9.1  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 196 GTYQGKHTILVNKGLR 243
           G + G+ T+L + GLR
Sbjct: 109 GCFSGESTVLTSTGLR 124


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 10  NNNHPFHLVDY 42
           N +HPFHL  Y
Sbjct: 592 NLSHPFHLHGY 602


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 10  NNNHPFHLVDY 42
           N +HPFHL  Y
Sbjct: 592 NLSHPFHLHGY 602


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,841
Number of Sequences: 336
Number of extensions: 642
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)