Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h06
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.6  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   6.3  
03_05_0092 - 20714102-20717902                                         28   6.3  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   8.3  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   8.3  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    28   8.3  

>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 368 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 502
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 416 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 526
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -1

Query: 475 FHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFF 296
           F  +       PL +  L++ T   N+  ++N L L   H +    D+H+++ I  ++FF
Sbjct: 571 FFMVTESSGDVPLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFF 626

Query: 295 QEIYNSN 275
            +  NS+
Sbjct: 627 ADFSNSD 633


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIP 461
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 55  RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 183
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 146  QKSNMVNMPEQQSSTETAAVCKNEKLLNKL--ESSSYNKSNMDQLIAIVNFLEKKNINYI 319
            Q+    N+ E        A  + E L  ++  ESS   K+ MD LIA+    E +  +Y+
Sbjct: 1301 QEEEEPNLDEDMHDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEK-SYL 1359

Query: 320  LNVMPVMQDERKMSKRKKKV 379
              V    + ER +++++ ++
Sbjct: 1360 QEVNQRKETERTLARQRLEI 1379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,839
Number of Sequences: 37544
Number of extensions: 397971
Number of successful extensions: 986
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)