Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h06
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 30 1.4
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical ... 30 1.9
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 5.7
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 28 5.7
U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeo... 28 7.5
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 27 9.9
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 188 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 361
T + CK +K L S + N+D I V+F +KK I + +V+ DE
Sbjct: 33 TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92
Query: 362 KRKKKVINNNKYILFN 409
K + + +Y++ N
Sbjct: 93 KEAYEEEESREYVIEN 108
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 149 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 328
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + + L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178
Query: 329 MPVMQDERKMSKRKKKVINN 388
Q+ K K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196
>AC006701-1|AAM97962.1| 327|Caenorhabditis elegans Hypothetical
protein Y104H12D.2 protein.
Length = 327
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 197 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 316
AA KNE LL+ L+ SYN++ Q++ I K N NY
Sbjct: 34 AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 451 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 326
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = -1
Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 371
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 370 LAFGHFAFVLHD 335
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 320 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 481
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 701 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 543
RL C + Y+A LL LP+ + Q+ S +L RC T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +2
Query: 281 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAM 460
I F++ +N+ + N V++ E + + ++ NN Y + + +P + + P +
Sbjct: 67 IARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYV 123
Query: 461 WDLVKN 478
WD + N
Sbjct: 124 WDTINN 129
>U41547-5|AAX88831.1| 272|Caenorhabditis elegans C.elegans homeobox
protein 60 protein.
Length = 272
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +2
Query: 143 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN-YI 319
+ K ++ +++ T + V +N + ++ + SN+ Q I+ K NI
Sbjct: 68 IMKQIQLDKDMEKALTNSEEVLRNHRDFRPIDEKDF--SNIRQSISKRFEHSKNNIRGEA 125
Query: 320 LNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVK 475
+ V++ E + RK++ + N + +W+ +Q +PS +L K
Sbjct: 126 ATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 227 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNK 394
N LE+ KSNM +++ N EK + L + RK++++KK N +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 27.5 bits (58), Expect = 9.9
Identities = 33/134 (24%), Positives = 54/134 (40%)
Frame = +2
Query: 146 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 325
+KS V + ++ E EKLL K M+Q I N LE+K
Sbjct: 868 EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924
Query: 326 VMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVF 505
VM M D + +RK + +N K L N K+++ + +L K E + +
Sbjct: 925 VMK-MNDVLREYERKIEQLNMEKTDLENE-NQKLRETQNRQDSHYSNLEKEVMEKSSLI- 981
Query: 506 IFDHTEKMGKKMAD 547
D + +K++D
Sbjct: 982 --DELQNQIQKLSD 993
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,919,706
Number of Sequences: 27780
Number of extensions: 378103
Number of successful extensions: 1079
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -