Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h03
(689 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 24 1.6
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 24 1.6
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 24 1.6
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 24 1.6
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 24 1.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 2.1
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 22 6.3
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 8.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 8.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 8.4
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.4
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 8.4
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
+ Y KY S R + R R + I+ L+N + + NN KKL I
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
+ Y KY S R + R R + I+ L+N + + NN KKL I
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
+ Y KY S R + R R + I+ L+N + + NN KKL I
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
+ Y KY S R + R R + I+ L+N + + NN KKL I
Sbjct: 53 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
+ Y KY S R + R R + I+ L+N + + NN KKL I
Sbjct: 286 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.4 bits (48), Expect = 2.1
Identities = 9/28 (32%), Positives = 10/28 (35%)
Frame = -1
Query: 635 CNTLCDCFNISECSLTCTCAQKPDCLVD 552
C LC C + C TC C D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.8 bits (44), Expect = 6.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 216 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 121
+ Y+RL H N I ++ F RL T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 8.4
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 387 IVKHAFEIIHLLTGENPLQVLVTAII 464
+++HAFEI +L P+ +++ I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 8.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 355 RPCIIREFVRRSTIGHWAL 299
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 8.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 355 RPCIIREFVRRSTIGHWAL 299
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 8.4
Identities = 5/19 (26%), Positives = 12/19 (63%)
Frame = -2
Query: 355 RPCIIREFVRRSTIGHWAL 299
+ +++E +R+ GHW +
Sbjct: 63 KKALMKERIRQKAAGHWVI 81
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.4 bits (43), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 337 EFVRRSTIGHWALRKRLCAYLPAE 266
EF R T AL K+LC PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,725
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -