Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h02
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         30   0.62 
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        30   0.62 
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.5  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  28   3.3  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       27   4.4  
SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)            27   4.4  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   5.8  
SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 221
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 221
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 15  ASFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQC 137
           A  GAR + V  ++    +    VLAR  + L R G++G+C
Sbjct: 594 AVLGARAVCVAGALSARSLSGHAVLARSARALTRLGARGRC 634


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 23   WCTCVNC-IKLDITSQN--G*TQRSCSCRESTRPYWFSG 130
            WC C NC +KL I+ +       R C+ +   R  WF G
Sbjct: 2446 WCECSNCSLKLFISHKERMPMMHRVCNMQRKIRTSWFGG 2484


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +3

Query: 33  VLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 203
           V++VL  ++ A +  P +  R+   + R     Q + +KVE + ET  ++   ++GP
Sbjct: 641 VMLVLIELMPAVV-MPMMYTRIFLTVRRHNRLDQKSGIKVELVDETFTKLKGEIRGP 696


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 257 PPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELD 150
           P S   RFK SED   T +SF    D   G P ELD
Sbjct: 568 PSSSPKRFKTSEDEEPTAQSFE--SDEIPGSPEELD 601


>SB_26672| Best HMM Match : Exo_endo_phos (HMM E-Value=0.46)
          Length = 1232

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -3

Query: 251 SFTFRFKKSEDVSVTDRSFHVPDDLTAGL----PNELDLHLSTLALRTSTAEYFHDTSKN 84
           +FT   ++++ +S+TD  F V +++  G      +EL L   T+A  T   EY     K 
Sbjct: 373 AFTLELRQTKSLSLTDEQFPVDEEMQRGCVRTPVSELTLEARTIAQDTD-LEYLKQLKKT 431

Query: 83  V 81
           +
Sbjct: 432 L 432


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 120  QYGRVLSRHEQERWVYPFWLVISSLIQLTHVHQSWR 13
            QYG+V     Q+ WV  +W+  S       ++++WR
Sbjct: 4879 QYGQVRGNRVQQMWVTAYWIRSSQDGVKFTLYRNWR 4914


>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 115 RPSTFTTRARTLGLSILACNIELNTINTRAPK 20
           RPS     ART     L     L+TINTR+P+
Sbjct: 548 RPSGLAIGARTRPKRHLPLGTSLSTINTRSPR 579


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,316,782
Number of Sequences: 59808
Number of extensions: 231720
Number of successful extensions: 550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)