Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h01
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...   116   2e-26
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...   112   2e-25
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    42   7e-04
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    41   9e-04
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    41   0.001
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           31   0.70 
09_01_0068 - 1008203-1008280,1008406-1008651                           28   8.6  

>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score =  116 bits (279), Expect = 2e-26
 Identities = 53/86 (61%), Positives = 66/86 (76%)
 Frame = +3

Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
           MKLVRFLMKL++ETVTIELKNG+ VHGTITGVD++MNTHLK VK+TLK +  +  + LS+
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSV 60

Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
           RGNNIRYY            ++DTP+
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPR 86


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score =  112 bits (270), Expect = 2e-25
 Identities = 51/83 (61%), Positives = 65/83 (78%)
 Frame = +3

Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
           +RFLMKL++ETVTIELKNG+VVHGTITGVD++MNTHLK VK+TLK +  + L+ LS+RGN
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 225

Query: 291 NIRYYXXXXXXXXXXXXIDDTPK 359
           NIRYY            ++DTP+
Sbjct: 226 NIRYYILPDSLNLETLLVEDTPR 248


>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = +3

Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
           V+ L + +   VT+ELK G V  G++   +   N  L  +  T K+ +  QLE + IRG+
Sbjct: 9   VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68

Query: 291 NIRY 302
            +R+
Sbjct: 69  RVRF 72


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
           V+ L + +   VT+ELK G V  G +   +   N  L  +  T K+ +  QLE + IRG+
Sbjct: 9   VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68

Query: 291 NIRY 302
            +R+
Sbjct: 69  RVRF 72


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 150 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 302
           +ELKNG   +G +   D  MN HL+ V  T K+ ++  ++    IRGN I+Y
Sbjct: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKY 68


>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 236
           M    +  +L  + VT+ELKN   + GT+  VD  +N  L+  +V
Sbjct: 1   MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45


>09_01_0068 - 1008203-1008280,1008406-1008651
          Length = 107

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 137 RDGHYRVEKRQCRSWNNYRGGCRYEHT 217
           RD H R  KRQ R W   RGG  Y  T
Sbjct: 40  RDDHERQHKRQLRGW-RARGGGSYRAT 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,498
Number of Sequences: 37544
Number of extensions: 232992
Number of successful extensions: 451
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)