Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10h01
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)                   37   0.019
SB_13909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   28   6.7  
SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)                      28   8.8  

>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +3

Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
           ++ L +     +T+E  NG V  G +   +  MN  +  + VT ++    QLE + +RG+
Sbjct: 7   IKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQVFVRGS 66

Query: 291 NIRY 302
            IR+
Sbjct: 67  KIRF 70


>SB_11291| Best HMM Match : LSM (HMM E-Value=6.5e-11)
          Length = 114

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +3

Query: 108 LVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 287
           LV  +  +     T+EL+N S + G I  VD  MN  +K VK    + E   L  + + G
Sbjct: 13  LVCLIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAMFVVG 72

Query: 288 NNIRY 302
             IRY
Sbjct: 73  TQIRY 77


>SB_13909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 18  PYFV*TFEVKPYRRRYCFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNG---SVVHGTI 188
           P F    +V+PY   Y   DK VNKS    L R   ++     T  +  G    + HG  
Sbjct: 138 PLFAREEDVEPYYEAYRKFDKAVNKSPLKVLTRASTRVLTMASTRGINQGIDKGIDHGID 197

Query: 189 TGVD 200
            G+D
Sbjct: 198 NGID 201


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 241 NVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILL 95
           N+T TA   +  A   P+IV  + L F N    V  L F K L  F+++
Sbjct: 140 NITLTAINAIIAAVFLPLIVNFSILHFMNEGQQVG-LQFTKVLQVFLII 187


>SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)
          Length = 277

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -1

Query: 238 VTFTAFKCVFIATSTPVIVP--*TTLPFFN-SIVTVSWLSFIKNLTSFILLDLL 86
           +T TA   VFI T+TP+++    TT    N  I+T + +  +  +T+  ++++L
Sbjct: 171 ITITAIMIVFITTTTPIMIVLITTTTTIMNVFIITTTAIMIVFIITTTAIMNVL 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,110,383
Number of Sequences: 59808
Number of extensions: 298876
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)