Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10h01
(724 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 130 4e-30
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 130 4e-30
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 130 4e-30
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 130 4e-30
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 130 4e-30
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 128 2e-29
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 48 4e-05
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 48 4e-05
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 38 0.048
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 38 0.048
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 38 0.048
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 38 0.048
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 36 0.19
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 36 0.19
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.19
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 36 0.19
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.19
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.19
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 36 0.19
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 36 0.19
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 36 0.19
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 36 0.19
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 36 0.19
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 36 0.19
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.59
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.59
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.59
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.59
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 34 0.59
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 34 0.59
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 34 0.59
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 34 0.59
BC101321-1|AAI01322.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.0
BC101320-1|AAI01321.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.0
BC101318-1|AAI01319.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.0
AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens ... 31 3.2
BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting comp... 30 7.3
BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting comp... 30 7.3
AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein. 30 7.3
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 130 bits (315), Expect = 4e-30
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 130 bits (315), Expect = 4e-30
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 130 bits (315), Expect = 4e-30
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 130 bits (315), Expect = 4e-30
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 130 bits (315), Expect = 4e-30
Identities = 64/86 (74%), Positives = 70/86 (81%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 128 bits (309), Expect = 2e-29
Identities = 63/86 (73%), Positives = 69/86 (80%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 281
MKLVRFLMKLSHETV IELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 282 RGNNIRYYXXXXXXXXXXXXIDDTPK 359
RGNNIRY+ +D PK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPK 86
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 47.6 bits (108), Expect = 4e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 96 SRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 275
S L+ L L T++L++ SV HG I VD MN L V T + +++L+ L
Sbjct: 13 SENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDL 72
Query: 276 SIRGNNIRY 302
+ G N+RY
Sbjct: 73 FVTGRNVRY 81
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 47.6 bits (108), Expect = 4e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +3
Query: 96 SRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 275
S L+ L L T++L++ SV HG I VD MN L V T + +++L+ L
Sbjct: 13 SENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDL 72
Query: 276 SIRGNNIRY 302
+ G N+RY
Sbjct: 73 FVTGRNVRY 81
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 291 NIRY 302
IR+
Sbjct: 67 KIRF 70
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 291 NIRY 302
IR+
Sbjct: 67 KIRF 70
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 291 NIRY 302
IR+
Sbjct: 67 KIRF 70
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.048
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 111 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 290
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 291 NIRY 302
IR+
Sbjct: 67 KIRF 70
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.19
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 102 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 275
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 276 SIRGNNIRY 302
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.59
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 120 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 296
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 297 RY 302
+Y
Sbjct: 67 KY 68
>BC101321-1|AAI01322.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -1
Query: 325 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 146
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 145 TVSWLSFIKNLTSFILLDLLTNL 77
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>BC101320-1|AAI01321.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -1
Query: 325 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 146
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 145 TVSWLSFIKNLTSFILLDLLTNL 77
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>BC101318-1|AAI01319.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -1
Query: 325 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 146
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 145 TVSWLSFIKNLTSFILLDLLTNL 77
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens
cDNA FLJ13745 fis, clone PLACE3000244, highly similar to
PROTEIN TSG24 (MEIOTIC CHECK POINT REGULATOR). ).
Length = 1424
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 72 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 233
HD L N+ + + + H VT+EL NGSVV TI + + + T L+A+K
Sbjct: 47 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSVVRITIPEIATSELVQTCLQAIK 106
Query: 234 VTLKNREELQL 266
L +Q+
Sbjct: 107 FILPKEIAVQM 117
>BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 72 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 233
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 234 VTLKNREELQL 266
L +Q+
Sbjct: 627 FILPKEIAVQM 637
>BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 72 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 233
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 234 VTLKNREELQL 266
L +Q+
Sbjct: 627 FILPKEIAVQM 637
>AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.
Length = 1944
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 72 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 233
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 234 VTLKNREELQL 266
L +Q+
Sbjct: 627 FILPKEIAVQM 637
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,049,918
Number of Sequences: 237096
Number of extensions: 1341897
Number of successful extensions: 1841
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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