Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g24
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    30   0.38 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    29   0.50 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.7  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    26   4.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   8.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   8.1  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 100 QNVLINSIFQVYLLFLPSVKNFMTFHDLY 14
           Q  ++N + QVY   LP +  FM  H+LY
Sbjct: 148 QGAILNKVIQVYESHLPYLLQFMVDHNLY 176


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 161 NATNPTLSNFPLKQTNCLGRPKCVNKL 81
           N TNPT++N P   TN L RPK +  +
Sbjct: 400 NRTNPTVNNLPSYPTN-LARPKAIKPM 425


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 218 DFYSFKLFNATLLALIPIFNATNP 147
           D +SF +FN  +L  +P +N  +P
Sbjct: 456 DAFSFFIFNRFVLVYVPAYNGVDP 479


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 410 ILIRTRGRRRGHYIVSVGTYPSVF 339
           IL R   RR GHY+V  G  P+ F
Sbjct: 353 ILQRLAHRRDGHYVVVTGITPTPF 376


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 483 NIICKFQSCVGLCIESEGTVGRCSN 409
           N IC+FQS  G C+E+   +   +N
Sbjct: 643 NDICEFQSRSGFCVETGRFINALNN 667


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 525 STVKEKSNNNYLNSHI 572
           STVKE S   Y+NSH+
Sbjct: 362 STVKENSTRPYVNSHL 377


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 351 VCSHRHYIVS--TSSTPCPN*YWNSGQPYPHSQYTTQHN 461
           V SH  Y+V   TS   C N    +  P+PHS +   HN
Sbjct: 109 VASHPSYMVQSPTSYHACSN----NQSPFPHSHHPPLHN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,141
Number of Sequences: 5004
Number of extensions: 53892
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)