Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g24
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical po...    28   5.8  
AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical
           protein R07D5.1 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 381 WTLYSVCGNIPICIFMFKIRLKLVVSKGYIVIKNKKLTLPIH 256
           W  +  CG + +C  M+ I +  + S+G   ++     LP H
Sbjct: 410 WFWFLTCGIVTVCNTMYWILIMFIPSQGMSFVRKYLRVLPDH 451


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 188 TLLALIPIFNATNPTL--SNFPLKQTNCLGRPKCVNKLNFS 72
           +L    P F  T+ +L  +NFP K    + R  CV  +NFS
Sbjct: 19  SLFTTAPFFQFTSDSLIFTNFPAKLIYSIFRSVCVQHMNFS 59


>Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical
           polypeptide protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 381 WTLYSVCGNIPICIFMFKIRLKLVVSKGYIVIKNKKLTLPIH 256
           W  +  CG + +C  M+ I +  + S+G   ++     LP H
Sbjct: 410 WFWFLTCGIVTVCNTMYWILIMFIPSQGMSFVRKYLRVLPDH 451


>AF025454-7|AAC71154.3|  367|Caenorhabditis elegans Hypothetical
           protein F34D6.4 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 206 FKLFNATLLAL--IP-IFNATNPTLSNFPLKQTNCLGRPKCVNKLNFSSVFIIF 54
           FK+ N  L  L   P IF +     S F L+ T  L RP  ++ L F S+F +F
Sbjct: 2   FKISNPNLFCLPYFPHIFLSAETFFSRFLLRVTYQLLRPSQISFLFFFSIFYVF 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,624
Number of Sequences: 27780
Number of extensions: 298310
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)