Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g24
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   0.41 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 384 TWTLYSVCGNIPICIFMFKIRLKLVVSKGYIVIKNKKLTLPIHN*HCIAI 235
           T  L S+  NIP  +   +I L +++  GY++I     ++P++N + I +
Sbjct: 38  TQALESIIANIPTWLSFIRIVLVILLRAGYVLIHIG--SVPVNNINLILL 85


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 95  ILVYRDSLFVSVESLKVLDLLR*KLESVLIK 187
           +L YRDSL +SV +L +  LLR K++ + I+
Sbjct: 316 LLYYRDSLALSVFALILTALLR-KMQEMSIE 345


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 369 SVCGNIPICIFMFKIRLKLVVSKGYIVI 286
           +V GNI +C+ +F +R KL     Y+++
Sbjct: 55  TVIGNILVCVAVFLVR-KLRRPCNYLLV 81


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 510 KITTFSTVKEKSNNNYLNSHIKLF 581
           K + ++     +NNNY N + KL+
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,461
Number of Sequences: 438
Number of extensions: 3970
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)