Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g20
(712 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 259 2e-69
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 259 2e-69
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 259 2e-69
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 259 2e-69
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 259 2e-69
AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi p... 59 5e-09
AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA... 59 5e-09
BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p pro... 46 5e-05
AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar pr... 46 5e-05
AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA... 46 5e-05
M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal degene... 33 0.51
BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p pro... 33 0.51
AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA... 33 0.51
AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD... 33 0.51
AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC... 33 0.51
AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB... 33 0.51
X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal ... 29 6.2
AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p pro... 29 6.2
AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-P... 29 6.2
AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-P... 29 6.2
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 259 bits (635), Expect = 2e-69
Identities = 123/174 (70%), Positives = 138/174 (79%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 550
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 551 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 712
+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV RKTCT L
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTL 207
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 259 bits (635), Expect = 2e-69
Identities = 123/174 (70%), Positives = 138/174 (79%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 550
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 551 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 712
+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV RKTCT L
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTL 207
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 259 bits (635), Expect = 2e-69
Identities = 123/174 (70%), Positives = 138/174 (79%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 550
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 551 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 712
+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV RKTCT L
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTL 207
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 259 bits (635), Expect = 2e-69
Identities = 123/174 (70%), Positives = 138/174 (79%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 550
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 551 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 712
+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV RKTCT L
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTL 207
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 259 bits (635), Expect = 2e-69
Identities = 123/174 (70%), Positives = 138/174 (79%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLD
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 550
KTTA LFK+LEKYRPE+ +P+ + +GTNTVTKL+E
Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE 153
Query: 551 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCL 712
+KKAQLVVIAHDVDP+ELVLFLPALCRKMGVPYCIVKGK+RLG LV RKTCT L
Sbjct: 154 QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTL 207
>AF208396-1|AAF20209.1| 127|Drosophila melanogaster Hoi-polloi
protein.
Length = 127
Score = 59.3 bits (137), Expect = 5e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 506 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
N +R G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALG 89
>AE014134-1677|AAF52798.2| 127|Drosophila melanogaster CG3949-PA
protein.
Length = 127
Score = 59.3 bits (137), Expect = 5e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 506 NTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
N +R G N TK + + A +VV+A D +PIE++L LP LC VPY V+ K LG
Sbjct: 32 NQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALG 89
>BT023752-1|AAZ41760.1| 160|Drosophila melanogaster RH66170p
protein.
Length = 160
Score = 46.0 bits (104), Expect = 5e-05
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 512 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 691
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA +
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 692 RKTCT 706
K T
Sbjct: 127 VKRGT 131
>AF217228-1|AAF27630.1| 160|Drosophila melanogaster nucleolar
protein NHP2 protein.
Length = 160
Score = 46.0 bits (104), Expect = 5e-05
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 512 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 691
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA +
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 692 RKTCT 706
K T
Sbjct: 127 VKRGT 131
>AE014296-2434|AAF49701.1| 160|Drosophila melanogaster CG5258-PA
protein.
Length = 160
Score = 46.0 bits (104), Expect = 5e-05
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 512 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 691
+R+G V + K + + + A DV P++++ LPA+C + G+PY ++ LGA +
Sbjct: 67 LRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMG 126
Query: 692 RKTCT 706
K T
Sbjct: 127 VKRGT 131
>M89628-1|AAB00734.1| 661|Drosophila melanogaster retinal
degeneration C protein protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>BT015959-1|AAV36844.1| 603|Drosophila melanogaster RH46370p
protein.
Length = 603
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3312|AAF49044.2| 603|Drosophila melanogaster CG6571-PA,
isoform A protein.
Length = 603
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 592
>AE014296-3311|AAO41219.1| 661|Drosophila melanogaster CG6571-PD,
isoform D protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3310|AAO41218.1| 661|Drosophila melanogaster CG6571-PC,
isoform C protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>AE014296-3309|AAO41217.1| 661|Drosophila melanogaster CG6571-PB,
isoform B protein.
Length = 661
Score = 32.7 bits (71), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 500 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIE 601
RP+ ++ T+ VT L +K +V+ HD+DP +
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTD 650
>X89659-1|CAA61806.1| 151|Drosophila melanogaster 40S ribosomal
protein S12 protein.
Length = 151
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 521 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 53 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 105
>AY058531-1|AAL13760.1| 139|Drosophila melanogaster LD23808p
protein.
Length = 139
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 521 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2235|AAN11844.2| 139|Drosophila melanogaster CG11271-PC,
isoform C protein.
Length = 139
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 521 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
>AE014296-2234|AAN11845.1| 139|Drosophila melanogaster CG11271-PB,
isoform B protein.
Length = 139
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 521 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 679
G + K ++K++A L ++A D + ALC + +P V +LG
Sbjct: 41 GIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLG 93
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,541,762
Number of Sequences: 53049
Number of extensions: 543645
Number of successful extensions: 2319
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -