Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g19
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   3.2  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 453 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 316
           RL+I  I GLS+  +STPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 341  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 442
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 341  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 442
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 435 IDGLSTEHNSTPSFSVNKMGSPGML 361
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 369 PENPFCLQKTRGCCCAPSTD 428
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 23  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 23  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 23  VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 142
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 435 IDGLSTEHNSTPSFSVNKMGSPGML 361
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical
           protein W03G1.6b protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/99 (21%), Positives = 44/99 (44%)
 Frame = +2

Query: 281 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 460
           ++ + ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366

Query: 461 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 577
           D   L + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/99 (21%), Positives = 44/99 (44%)
 Frame = +2

Query: 281 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 460
           ++ + ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366

Query: 461 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 577
           D   L + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 128 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 27
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 128 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 27
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 56  IVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 190
           I++S   ++   E+A  D +NLS L   ET+  K +    M ML+
Sbjct: 247 ILSSIRNVRGDVEIAATDFENLSFLTGLETITSKHSYLSKMTMLN 291


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 467 EALVNFENDNC-NVRIAKTFGASKRKNTTRSDDYESN 574
           EA+ N ++DN  +  + KTFG +   +++ SD+  SN
Sbjct: 39  EAVKNLKDDNVLSKALVKTFGLNSSSSSSLSDESSSN 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,995
Number of Sequences: 27780
Number of extensions: 314095
Number of successful extensions: 943
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)