Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g16
         (664 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q52PP3 Cluster: Putative DNA dependent DNA polymerase; ...    33   4.6  
UniRef50_Q0C1M9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  
UniRef50_A6CEF5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  
UniRef50_Q8N930 Cluster: CDNA FLJ38464 fis, clone FEBRA2021171; ...    33   8.1  
UniRef50_P51843 Cluster: Nuclear receptor 0B1; n=28; Amniota|Rep...    33   8.1  

>UniRef50_Q52PP3 Cluster: Putative DNA dependent DNA polymerase;
           n=1; Xanthomonas phage Xp15|Rep: Putative DNA dependent
           DNA polymerase - Xanthomonas phage Xp15
          Length = 268

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 20/51 (39%), Positives = 32/51 (62%)
 Frame = +3

Query: 249 VETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDG 401
           VE + G + +P++ SLT Q K   V  L ++K E +  A+ + E+ARLR+G
Sbjct: 41  VEHATGITYVPEQESLTWQDKYHNVNALANQKMEKI--AELQNEVARLREG 89


>UniRef50_Q0C1M9 Cluster: Putative uncharacterized protein; n=1;
           Hyphomonas neptunium ATCC 15444|Rep: Putative
           uncharacterized protein - Hyphomonas neptunium (strain
           ATCC 15444)
          Length = 229

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 25/76 (32%), Positives = 35/76 (46%)
 Frame = -2

Query: 438 LEHLAF*NCPLACHRAAWPAPFFGPQTANSHAFYPKASPPWRLSIALSMKAVVEFQMGLE 259
           +EH+    C L C RAA  AP   P T  + A  P+   P RL    S+  + +    LE
Sbjct: 61  MEHIF--RCLLICMRAAPHAPKPAPFTPRASACAPRPPRPRRLPARFSLN-LSQLAKDLE 117

Query: 258 KFPLPRFHLQDVKKAK 211
           K+  P   L + KK +
Sbjct: 118 KYGAPAPALANRKKRR 133


>UniRef50_A6CEF5 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 317

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 194 ATLCPIFAFFTSWR*KRGSGNFSRPIWNSTTAFIDRAIESRQGGEAFG*KA*EF-AVCGP 370
           A +   F F    R   G+ NF+   W + T  + RAI+S    E+ G +A +  A+C  
Sbjct: 24  AVVAESFEFHIVGRGMAGASNFNSCGWEAATEQVQRAIQS--AFESAGTEAHQVAAICLG 81

Query: 371 KKGAGQAARWQA 406
             GAG+ A  QA
Sbjct: 82  MSGAGRTAEQQA 93


>UniRef50_Q8N930 Cluster: CDNA FLJ38464 fis, clone FEBRA2021171;
           n=1; Homo sapiens|Rep: CDNA FLJ38464 fis, clone
           FEBRA2021171 - Homo sapiens (Human)
          Length = 215

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 414 CPLACHRAAWPAPFFGPQTANSHAFYPKASPPWRLSIALSMKA 286
           CP  CH   W  P+  P  A+S + +      W+   A S++A
Sbjct: 31  CPCRCHSHCWRWPYLQPVPASSSSSWASFQGSWQPESAASLRA 73


>UniRef50_P51843 Cluster: Nuclear receptor 0B1; n=28; Amniota|Rep:
           Nuclear receptor 0B1 - Homo sapiens (Human)
          Length = 470

 Score = 32.7 bits (71), Expect = 8.1
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 105 VSWHPDHFGLQFRKY*NSSQFGT-TLISQHTRTTH 4
           V ++PD  GLQ  KY    Q+GT  ++S+HTR TH
Sbjct: 385 VLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,372,460
Number of Sequences: 1657284
Number of extensions: 11551480
Number of successful extensions: 36253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36241
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)