Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g16
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23)                    28   5.9  
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_35837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               28   7.8  
SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)                   28   7.8  

>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 267  PSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQVGNFKMP 428
            PS +P  P  TE+    KV  LL       + +  +  LAR    +++GN   P
Sbjct: 1239 PSEMPHYPKTTEKYSNKKVLELLKVPETRSVGSVWRNRLARSAVDRKLGNSNPP 1292


>SB_7864| Best HMM Match : rve (HMM E-Value=2.9e-23)
          Length = 346

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 261 EKFPLPRFHLQD-VKKAKIGHSVAYGH 184
           EK PLP+FH+ D V+ +K+ H  A G+
Sbjct: 292 EKRPLPKFHVGDKVRISKVKHIFAKGY 318


>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 399 HRAAWPAPF---FGPQTANSHAFYPKASPPWRLSIALSMKAVVEFQMGLEKFPLPRFHLQ 229
           +R  WP+P      P   N+H   P+ SP   +      +A V  + G +K P P  +  
Sbjct: 103 NRVTWPSPADYQARPTLGNTHITLPQ-SPSHSMG---RRQAFVIGRKGADKEPSPNQYNH 158

Query: 228 DVKKAKI 208
           D+ KAK+
Sbjct: 159 DIAKAKV 165


>SB_35837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 441 VLEHLAF*NCPLACHRAAWPAPFFGPQTANSHAFYPKA 328
           +++HL    C + CH   W       +T N  ++ P+A
Sbjct: 20  IVDHLIAPRCMIVCHIGKWLENHLWQRTENDRSYLPQA 57


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 261 EKFPLPRFHLQD-VKKAKIGHSVAYGH 184
           +K PLP+FH+ D V+ +K+ H+ A G+
Sbjct: 714 KKRPLPKFHVGDKVRISKVKHTFAKGY 740


>SB_16139| Best HMM Match : rve (HMM E-Value=3.6e-21)
          Length = 889

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 261 EKFPLPRFHLQD-VKKAKIGHSVAYGH 184
           +K PLP+FH+ D V+ +K+ H+ A G+
Sbjct: 516 KKRPLPKFHVGDKVRISKVKHTFAKGY 542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,233
Number of Sequences: 59808
Number of extensions: 373063
Number of successful extensions: 1226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)