Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g16
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.85 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 594 IDITAEQEGEDDDIESYFLPD 656
           +D  A+QEG+DD ++    P+
Sbjct: 684 VDAPADQEGDDDQVDEREYPE 704


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 387 WPAPFFGPQTANSHAFYPKA 328
           W  PF G Q  N   FY K+
Sbjct: 294 WRIPFNGIQMPNLMVFYEKS 313


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 312 LSIALSMKAVVEFQMGLEKF 253
           + I + +++V+EF+ GL+ F
Sbjct: 198 VEIKVQVESVIEFEPGLDSF 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,394
Number of Sequences: 438
Number of extensions: 3384
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)