Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g16
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    28   6.4  
At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 / 4-coumaroyl...    27   8.4  
At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 / 4-coumaroyl...    27   8.4  

>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 445 CGSGASGILKLPTCLPSRSLASSFFW 368
           CGSG +G +     LP   +AS+ FW
Sbjct: 306 CGSGVNGEISKSKSLPRNIMASARFW 331


>At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 /
           4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
           4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
           (4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
          Length = 495

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 231 GDENVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENL 356
           GD+   +  S G +G+P+   LT +  +  VA+ +D  + NL
Sbjct: 204 GDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNL 245


>At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 /
           4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
           4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
           (4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
          Length = 561

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 231 GDENVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENL 356
           GD+   +  S G +G+P+   LT +  +  VA+ +D  + NL
Sbjct: 204 GDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNL 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,616
Number of Sequences: 28952
Number of extensions: 257237
Number of successful extensions: 798
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)