Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g14
(249 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 24 2.6
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 24 2.6
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 24 2.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 24 2.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 24 3.4
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 23 4.5
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 23 4.5
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 23 4.5
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 23 5.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 23 7.8
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 23 7.8
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 23 7.8
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 23 7.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 7.8
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 24.2 bits (50), Expect = 2.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 91 LNNWKPDTLYLNLYQPV 141
LN KPD + L+LY+P+
Sbjct: 905 LNRQKPDKIDLDLYEPL 921
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 130 RDLNIAYLASSCSKVRPFRFYHQTQN 53
+DL A L +C V PF + H T+N
Sbjct: 314 KDLLFARLQKNCPWVIPFWYDHGTEN 339
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 24.2 bits (50), Expect = 2.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 178 HEPSYFEVFITKSNWGSSQSN 240
H F+ FI +S W QSN
Sbjct: 194 HSLKLFQYFINRSKWHMKQSN 214
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 2.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 67 DKSGMDEPLNNWKPDTL 117
+ + +D+ LN WK DTL
Sbjct: 254 EMNNLDDSLNEWKNDTL 270
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 23.8 bits (49), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 181 RVWPLDKNEHSSDKPVDRDLN 119
R+W LD + D PV+ LN
Sbjct: 397 RLWNLDNDVLHKDNPVEESLN 417
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 23.4 bits (48), Expect = 4.5
Identities = 6/21 (28%), Positives = 15/21 (71%)
Frame = -1
Query: 108 WLPVVQRFVHSAFITKHRIAI 46
W+ +++ +V + +I +HR+ I
Sbjct: 695 WIELLRSYVDTPYIDRHRVGI 715
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 23.4 bits (48), Expect = 4.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 67 DKSGMDEPLNNWKPDTL 117
D+SG EP+ WK D +
Sbjct: 101 DESGDPEPVRKWKEDQM 117
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 23.4 bits (48), Expect = 4.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 91 LNNWKPDTLYLNLYQPVYRMNVHFCPTAIHEPSY----FEVFITKSNWGSSQSNNLE 249
LN W D+L LN+ + + + T++ +Y E ++++ +SQ NLE
Sbjct: 421 LNAWVEDSLALNIDTTQFPSYLSYHETSVSHNTYRQNNLEELKNQNDYLTSQITNLE 477
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 23.0 bits (47), Expect = 5.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 58 VFGDKSGMDEPLNNW 102
VFGD +DE + NW
Sbjct: 66 VFGDNMILDEAVENW 80
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 102 EARYAIFKSLSTGLSDECSFL 164
E RY + +S + GLS SFL
Sbjct: 1232 ETRYLLLQSTAFGLSRSVSFL 1252
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 22.6 bits (46), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 115 LYLNLYQPVYRMNVHFCPTAIHEPSYFEV 201
L+LN +++ VH P H P Y EV
Sbjct: 306 LFLNKLD-LFKRKVHISPIQKHFPDYQEV 333
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 22.6 bits (46), Expect = 7.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 125 FKYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVCG 15
F ++ Q+ + + +PLL+ N + FEP ++ G
Sbjct: 105 FVFTYLAEQIVQDAKLPLLTVNLKSWKFEPPWPAIFG 141
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 22.6 bits (46), Expect = 7.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -3
Query: 73 FYHQTQNCDRLNRHRKV 23
FYH NC L+R K+
Sbjct: 263 FYHDDTNCIHLSRLEKI 279
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 7.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 164 VQRPYTSPAILKCLLL 211
V RPY S I+KC+ L
Sbjct: 692 VLRPYVSEIIVKCMKL 707
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,062
Number of Sequences: 5004
Number of extensions: 21602
Number of successful extensions: 55
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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