Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g14
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 27 1.6
08_01_0116 - 934801-934949,935745-935854,935930-936055,936439-93... 26 3.7
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677... 26 4.8
09_02_0449 - 9461385-9461431,9461487-9461628,9461733-9461831,946... 26 4.8
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 26 4.8
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 25 6.4
02_02_0419 - 10009686-10012568 25 6.4
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 25 6.4
07_01_0344 - 2490700-2493249 25 8.5
03_05_0669 + 26589867-26589927,26590674-26590858,26590950-265910... 25 8.5
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +1
Query: 82 DEPLNNWKPDTLYL 123
DE + +WKP+TLYL
Sbjct: 197 DEKIQDWKPETLYL 210
>08_01_0116 -
934801-934949,935745-935854,935930-936055,936439-936526,
936638-936758,936848-936926,937093-937156,937240-937445,
937676-937715,937748-938009
Length = 414
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 84 RTFEQLEARYAIFKSL---STGLSDECSFLSNGHTRAQLF 194
RT ++E R A +++ S GLS S G TRA+LF
Sbjct: 105 RTISEIEMRLAAARTMQARSQGLSPSDSGSDQGSTRARLF 144
>09_04_0697 +
19566182-19566851,19567565-19567598,19567677-19567725,
19567891-19567949,19568063-19568079,19568178-19568329,
19568459-19568548,19568793-19568886,19568976-19569127,
19569630-19569727,19570049-19570184,19570695-19570793,
19570898-19571029
Length = 593
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 145 DKPVDRDLNIAYLASSCSKVRP 80
D PVD L IA LA SC+ P
Sbjct: 542 DYPVDSALKIASLAKSCTHEEP 563
>09_02_0449 -
9461385-9461431,9461487-9461628,9461733-9461831,
9462052-9462100,9462179-9462212,9462880-9463055,
9463094-9463532,9463784-9463971,9463988-9464496
Length = 560
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 145 DKPVDRDLNIAYLASSCSKVRP 80
D PVD L IA LA SC+ P
Sbjct: 490 DYPVDSALTIASLAKSCTHEEP 511
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 204 KHFKIAGLVYGRWTKMNIH 148
K F ++GL++G++TK +H
Sbjct: 219 KLFYLSGLIHGKYTKREVH 237
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 169 LDKNEHSSDKPVDRDLNIAYLASSCSKVRPFRFY 68
LD+ + ++ P+D + L C+K+R F FY
Sbjct: 418 LDREANITESPLDN--GVRALLRGCTKLRRFAFY 449
>02_02_0419 - 10009686-10012568
Length = 960
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 97 NWKPDTLYLNLYQPVYRMNVHFCPTAIHEPS 189
+WKP + Y P +M HF H+PS
Sbjct: 439 SWKPPCKLVYAYFPDVQMGPHFPAWIKHQPS 469
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 160 FCPTAI-HEPSYFEVFITKSNWGS 228
+C T H +YF+ F K+ WGS
Sbjct: 279 YCTTQPPHHMTYFKFFFQKNQWGS 302
>07_01_0344 - 2490700-2493249
Length = 849
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 181 RVWPLDKN---EHSSDKPVDRDLNIAYLASSCSKVRPFRFY 68
R W D+N S+ + + NI+Y++S S P R Y
Sbjct: 241 RKWDSDENFIFSMSAARAISNSSNISYVSSDDSTSAPLRLY 281
>03_05_0669 +
26589867-26589927,26590674-26590858,26590950-26591045,
26591128-26591223
Length = 145
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 97 NWKPDTLYLNLYQPVYRMNVHFCP 168
+W P +L LNL P Y V CP
Sbjct: 104 SWIPGSLNLNLMAPPYIFAVLSCP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,269,247
Number of Sequences: 37544
Number of extensions: 126825
Number of successful extensions: 322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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