Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g14
(249 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 27 3.1
SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_32477| Best HMM Match : DUF593 (HMM E-Value=0.41) 27 3.1
SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 27 3.1
SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42) 27 3.1
SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71) 26 4.1
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 26 4.1
SB_6826| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_53418| Best HMM Match : zf-CCHC (HMM E-Value=8.2) 25 9.4
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1) 25 9.4
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 25 9.4
SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1350
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +1
Query: 58 VFGDKSGMDEPLNNWKPDTLYLNLYQPVYRMNVHFCPTAI 177
VFG++S + L+ W+ + + ++++ +H C T++
Sbjct: 185 VFGNRSKLTYSLSEWEKNAMQPSMHKKQIETTLHTCITSV 224
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 124 NLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWGSS 231
N Y+ R+N C H+ +Y +T +NWGSS
Sbjct: 3033 NKYKIAIRLNRFHC----HQVNYRYTSLTSANWGSS 3064
>SB_47423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 855
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 7 RVVPHTLCGAGSNDRN--SVFGDKSGMDEPLNNWKPDTLYLNLYQPVYRMNVHF 162
RV P LCG GS+D + + G D+P + + + + V ++ HF
Sbjct: 476 RVPPVDLCGTGSDDEDLCEIAASGLGPDDPACDSTDGKCGVEVEETVQKLESHF 529
>SB_32477| Best HMM Match : DUF593 (HMM E-Value=0.41)
Length = 214
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 124 NLYQPVYRMNVHFCPTAIHEPSYFEVFITKSNWGSS 231
N Y+ R+N C H+ +Y +T +NWGSS
Sbjct: 176 NKYKIAIRLNRFHC----HQVNYRYTSLTSANWGSS 207
>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1075
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 122 KYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVCGTTL 6
+Y VSG Q + +LS N + +S P + GTTL
Sbjct: 733 EYDVSGLQAYARYLFRVLSCNVKDKSLLSEPANATGTTL 771
>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
Length = 632
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 7 RVVPHTLCGAGSNDRN-SVFGDK--SGMDEPLNNWKPDTLYLNLYQPVYRMNV-HF 162
R + H+ G + N ++F K S +E N W ++ Y N +P Y+ N HF
Sbjct: 550 RTLKHSTRERGEDGENLAMFTGKYESAGEEATNMWYEESAYYNFNRPGYQSNTGHF 605
>SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 49 RNSVFGDKSGMDEPLN-NWKPDTLYLN--LYQPVYRMNVHFCPTAIHEPSY 192
R V+ + +P + +W P L+ +YQP ++ + H P A+ P Y
Sbjct: 96 REQVYCQSAVQQQPFDPHWNPSPLHQPQYVYQPPWQFHQHSRPMAVPIPYY 146
>SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71)
Length = 843
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 200 CLLLNQTGDRRNPI 241
C L N+TG RRNP+
Sbjct: 205 CFLCNETGTRRNPL 218
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 34 AGSNDRNSVFGDKSGMDEPLNNWKPDTLYLNLYQPVYRMNV 156
+G N N V +K+G+ + ++N KP+ L P Y MN+
Sbjct: 875 SGDNTTNFVINNKTGVIKLVSNRKPE-----LIGPYYTMNI 910
>SB_6826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 7 RVVPHTLCGAGSNDRNSVFGD 69
RV+P+TL G SND ++V D
Sbjct: 188 RVIPYTLLGTLSNDDDNVDAD 208
>SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 25 LCGAGSNDRNSVFGDKSGMDEPLNNWKPDTL 117
LC S+ + D+ G+++P+ +W+P L
Sbjct: 581 LCEDVSSRPGRIGEDRVGVEKPIEDWRPSEL 611
>SB_58448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -3
Query: 148 SDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 38
S P++ N+A LA++ + R + + ++Q C+RLN
Sbjct: 9 STLPLNPTENLATLATAFNNRRVYASHWKSQICNRLN 45
>SB_53418| Best HMM Match : zf-CCHC (HMM E-Value=8.2)
Length = 196
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 10 VVPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPDTL 117
V LC S+ + D+ G ++P+ W+P L
Sbjct: 143 VAGRNLCKDVSSRPRRIGEDRVGAEKPIEEWRPSEL 178
>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
Length = 1002
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 25 LCGAGSNDRNSVFGDKSGMDEPLNNWKPDTL 117
LC S+ + D+ G ++P+ W+P L
Sbjct: 615 LCKEVSSRSRRIGEDRVGAEKPIEEWRPSEL 645
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 128 RFKYSVSGFQLFKGSSIPLLSPNTEL 51
R Y G +K S+PLL NTE+
Sbjct: 962 RLLYEQCGLFTYKSMSVPLLQLNTEV 987
>SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 55 SVFGDKSGMDEPLNNWKPDTLYLNLYQPV 141
++FG S + + W P+T+Y N++Q +
Sbjct: 6 TIFGVLSLIAAMVTYWIPETIYSNMHQTI 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,634,344
Number of Sequences: 59808
Number of extensions: 157142
Number of successful extensions: 403
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 291125494
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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