Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g14
(249 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 1.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 2.3
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 2.3
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 2.3
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 3.1
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 3.1
AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone este... 21 3.1
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 3.1
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 3.1
AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein. 21 3.1
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 20 4.0
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 20 5.3
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 19 7.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 19 7.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 19 7.1
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 19 7.1
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 19 7.1
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 19 9.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 19 9.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 9.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 9.3
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.0
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Frame = +1
Query: 88 PLNN-WKPDTLYLNLYQPVY 144
P N W+PDT+ N P Y
Sbjct: 83 PYNRVWRPDTILYNNADPQY 102
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 94 NNWKPDTLYLNLYQPVYRM 150
N W PDT ++N Q + +
Sbjct: 92 NIWVPDTFFVNEKQSYFHI 110
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 94 NNWKPDTLYLNLYQPVYRM 150
N W PDT ++N Q + +
Sbjct: 92 NIWVPDTFFVNEKQSYFHI 110
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 2.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 94 NNWKPDTLYLNLYQPVYRM 150
N W PDT ++N Q + +
Sbjct: 31 NIWVPDTFFVNEKQSYFHI 49
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 20.6 bits (41), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 46 DRNSVFGDKSGMDEPLNN 99
D SVFG SGM + + N
Sbjct: 130 DVYSVFGSISGMGQAMTN 147
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 20.6 bits (41), Expect = 3.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 100 WKPDTLYLN 126
WKPDT + N
Sbjct: 86 WKPDTYFYN 94
>AY647436-1|AAU81605.1| 567|Apis mellifera juvenile hormone
esterase protein.
Length = 567
Score = 20.6 bits (41), Expect = 3.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 109 DTLYLNLYQPVYR 147
D LYLN+Y P R
Sbjct: 104 DCLYLNVYVPADR 116
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 20.6 bits (41), Expect = 3.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 111 YAIFKSLSTGLSDECSFLSNGHTR 182
YAI G +DE F ++ H R
Sbjct: 124 YAIIPQEIAGFADEGPFTTSAHFR 147
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 46 DRNSVFGDKSGMDEPLNN 99
D SVFG SGM + + N
Sbjct: 130 DVYSVFGSISGMGQAMTN 147
>AB083009-1|BAC54130.1| 567|Apis mellifera esterase protein.
Length = 567
Score = 20.6 bits (41), Expect = 3.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 109 DTLYLNLYQPVYR 147
D LYLN+Y P R
Sbjct: 104 DCLYLNVYVPADR 116
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 20.2 bits (40), Expect = 4.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = +1
Query: 181 EPSYFEVFITKSNW 222
EP Y+ + + K NW
Sbjct: 209 EPIYYNLTMVKLNW 222
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 19.8 bits (39), Expect = 5.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +3
Query: 3 SKGCAAHTLRC 35
S C+ HT+RC
Sbjct: 289 STTCSGHTVRC 299
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 19.4 bits (38), Expect = 7.1
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +1
Query: 94 NNWKPDTLYLN 126
N W+PD+ + N
Sbjct: 117 NMWRPDSFFKN 127
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 19.4 bits (38), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 14 CRTHFAVPVQTIAILCLVIKAE 79
C+T P IAI LV+ +E
Sbjct: 1173 CQTEQDAPEAPIAIKALVMSSE 1194
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 102 PHRLWKPDVLMYN 114
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -2
Query: 95 FKGSSIPLLSPNTELRSFEPAPQSVCG 15
+KG ++ ++S T+ + + P P ++ G
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVG 118
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 19.4 bits (38), Expect = 7.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -2
Query: 95 FKGSSIPLLSPNTELRSFEPAPQSVCG 15
+KG ++ ++S T+ + + P P ++ G
Sbjct: 92 YKGRALVVVSCVTKDQPYRPHPHNLVG 118
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 19.0 bits (37), Expect = 9.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 139 PVDRDLNIAYLASSCSKVRPFRFYHQTQ 56
P+DR L++ L+ V+ +HQ Q
Sbjct: 976 PLDRPLSLGALSVPNIFVKDVLVFHQGQ 1003
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 65 PNKLWKPDILMYN 77
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 133 PNKLWKPDILMYN 145
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.0 bits (37), Expect = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 88 PLNNWKPDTLYLN 126
P WKPD L N
Sbjct: 133 PNKLWKPDILMYN 145
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.317 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,804
Number of Sequences: 438
Number of extensions: 1339
Number of successful extensions: 26
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4401495
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
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