Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g14
(249 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16630.2 68416.m02126 kinesin motor family protein similar to... 27 2.3
At3g16630.1 68416.m02125 kinesin motor family protein similar to... 27 2.3
At3g11690.1 68416.m01433 expressed protein 27 2.3
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 27 2.3
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 27 2.3
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 27 2.3
At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to a... 26 3.0
At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to e... 26 3.0
At3g09730.1 68416.m01152 expressed protein 26 3.0
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 26 4.0
At5g13750.2 68418.m01601 transporter-related 25 5.3
At5g13750.1 68418.m01600 transporter-related 25 5.3
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 25 5.3
At1g13940.1 68414.m01637 expressed protein 25 5.3
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 25 9.2
At5g11040.1 68418.m01290 expressed protein weak similarity to hy... 25 9.2
At3g55160.1 68416.m06126 expressed protein 25 9.2
At3g16060.1 68416.m02030 kinesin motor family protein similar to... 25 9.2
At1g54480.1 68414.m06214 leucine-rich repeat family protein cont... 25 9.2
>At3g16630.2 68416.m02126 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 128 RFKYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVC 18
RFK +S F+++ G LLS +L E Q VC
Sbjct: 316 RFKLWLSYFEIYGGKLFDLLSERKKLCMREDGRQQVC 352
>At3g16630.1 68416.m02125 kinesin motor family protein similar to
mitotic centromere-associated kinesin GB:AAC27660 from
[Homo sapiens]; contains Pfam profile PF00225: Kinesin
motor domain
Length = 794
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 128 RFKYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVC 18
RFK +S F+++ G LLS +L E Q VC
Sbjct: 316 RFKLWLSYFEIYGGKLFDLLSERKKLCMREDGRQQVC 352
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 196 QNSWARVWPLDKNEHSSDKPVDRDLNIAYLASS 98
QNS + PLD ++ S D+ D L++ Y+ S
Sbjct: 127 QNSEFAIHPLDSDDVSDDEDDDNFLDLKYIGKS 159
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 55 SVFGDKSGMDEPLNNWKP 108
+VFGD+SG+ E + W+P
Sbjct: 39 AVFGDESGLVEKKSQWRP 56
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 55 SVFGDKSGMDEPLNNWKP 108
+VFGD+SG+ E + W+P
Sbjct: 39 AVFGDESGLVEKKSQWRP 56
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 55 SVFGDKSGMDEPLNNWKP 108
+VFGD+SG+ E + W+P
Sbjct: 39 AVFGDESGLVEKKSQWRP 56
>At5g39300.1 68418.m04759 expansin, putative (EXP25) similar to
alpha-expansin 4 precursor GI:16923355 from [Cucumis
sativus]; alpha-expansin gene family, PMID:11641069
Length = 260
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 4 LRVVPHTLCGAGSNDRNSVFGDKSGMDEPLNNW 102
L ++P+ + GAG V GDK+G NW
Sbjct: 179 LMILPYNVGGAGDIKLMQVKGDKTGWITMQKNW 211
>At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to
expansin2 GI:4884433 from [Lycopersicon esculentum];
alpha-expansin gene family, PMID:11641069
Length = 259
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 4 LRVVPHTLCGAGSNDRNSVFGDKSGMDEPLNNW 102
L ++P+ + GAG V GDK+G NW
Sbjct: 178 LMILPYNVGGAGDIKLMQVKGDKTGWITMQKNW 210
>At3g09730.1 68416.m01152 expressed protein
Length = 405
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 199 LQNSWARVWPLDKNEHSSDKPVDRDLNIAYLASSCSKVR-PFRF 71
L N ++R P +N +PV ++I +L S C K FRF
Sbjct: 21 LFNPFSRDSPTPENYAEEQEPVTPPVSIGFLDSPCDKTNGVFRF 64
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 148 SDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLNRHRKVCA 17
SD +DR L L C KV+P T +CD + C+
Sbjct: 1034 SDHSMDRKLVTEMLCMRCLKVQPVGPICTTPSCDGFPMAKHYCS 1077
>At5g13750.2 68418.m01601 transporter-related
Length = 392
Score = 25.4 bits (53), Expect = 5.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 13 VPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPD----TLYLNLYQPVYRMNVHFCPTAIH 180
+P TL ND S K D+P +N + + LN + P+ + +C ++H
Sbjct: 145 IPETLHNHKFNDDESYDALKDLSDDPESNKVAERNGKSSLLNNW-PLISSIIVYCVFSLH 203
Query: 181 EPSYFEVFITKSNWGSS 231
+ +Y E+F S W +S
Sbjct: 204 DMAYTEIF---SLWANS 217
>At5g13750.1 68418.m01600 transporter-related
Length = 478
Score = 25.4 bits (53), Expect = 5.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 13 VPHTLCGAGSNDRNSVFGDKSGMDEPLNNWKPD----TLYLNLYQPVYRMNVHFCPTAIH 180
+P TL ND S K D+P +N + + LN + P+ + +C ++H
Sbjct: 231 IPETLHNHKFNDDESYDALKDLSDDPESNKVAERNGKSSLLNNW-PLISSIIVYCVFSLH 289
Query: 181 EPSYFEVFITKSNWGSS 231
+ +Y E+F S W +S
Sbjct: 290 DMAYTEIF---SLWANS 303
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 40 SNDRNSVFGDKSGMDEPLNNWKPDT 114
S+ + FGD + P+ +WKP +
Sbjct: 451 SSSKGYSFGDNGSKEHPIFDWKPSS 475
>At1g13940.1 68414.m01637 expressed protein
Length = 1005
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 163 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLNRHRKVCAAQ 11
++++SS++ RDLN+ S+ S V + LN+ + VC ++
Sbjct: 514 RSDYSSERKFVRDLNLNVTLSNTSVVEVRKDEEHLATLPWLNKPKSVCNSE 564
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 24.6 bits (51), Expect = 9.2
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 81 GRTFEQLEARYAIFKSLSTGLSDEC----SFLSNGHTRAQL 191
GR EQL+A + +L GLS C S ++ TRA+L
Sbjct: 613 GRLQEQLQAERDLRSALEVGLSISCGQFSSQAADSKTRAEL 653
>At5g11040.1 68418.m01290 expressed protein weak similarity to
hypercellular protein [Aspergillus nidulans] GI:9309269
Length = 1186
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 184 ARVWPLDKNEHSSDKPVDRDLNIAYLASSCSKVRPFR 74
AR+ ++ H SD D D+ A S K+ PFR
Sbjct: 849 ARLLSMEIPAHVSDNLRDEDIERESNADSLVKINPFR 885
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 40 SNDRNSVFGDKSGMDEPLNNWKPDTLYLNLYQPVYRMN 153
SND+ ++F D + E L + + L N+++ V R++
Sbjct: 2010 SNDKKTLFSDIIELGEALKPFLRNPLVSNMFRVVVRLH 2047
>At3g16060.1 68416.m02030 kinesin motor family protein similar to
kinesin heavy chain member 2 GB:NP_032468 from [Mus
musculus]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 684
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 125 FKYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVC 18
F+ VS F+++ G LLS +L E Q VC
Sbjct: 292 FQLFVSFFEIYGGKLYDLLSERKKLCMREDGKQQVC 327
>At1g54480.1 68414.m06214 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]
Length = 550
Score = 24.6 bits (51), Expect = 9.2
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 115 AYLASSCSKVRPFRFYHQT 59
+Y+ ++ +K+ PF+FY T
Sbjct: 302 SYVGTAITKITPFKFYEST 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,935,038
Number of Sequences: 28952
Number of extensions: 107093
Number of successful extensions: 286
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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