Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   0.76 
UniRef50_UPI0000E49927 Cluster: PREDICTED: hypothetical protein;...    34   1.0  
UniRef50_UPI0000E25792 Cluster: PREDICTED: hypothetical protein;...    34   1.0  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    33   1.3  
UniRef50_Q2YC80 Cluster: CheA signal transduction histidine kina...    32   3.1  
UniRef50_A1TYN6 Cluster: Putative uncharacterized protein; n=1; ...    31   5.4  
UniRef50_Q750Z5 Cluster: AGL208Cp; n=1; Eremothecium gossypii|Re...    31   7.1  
UniRef50_A5E1B7 Cluster: Putative uncharacterized protein; n=1; ...    31   7.1  
UniRef50_Q54VV1 Cluster: Putative uncharacterized protein; n=1; ...    31   9.4  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 0.76
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -1

Query: 220 PVSFSSDLLSGSRFRSGSTF 161
           P+SFS DLLSGSRFR+G+ +
Sbjct: 396 PLSFSPDLLSGSRFRTGAEY 415


>UniRef50_UPI0000E49927 Cluster: PREDICTED: hypothetical protein; n=1;
            Strongylocentrotus purpuratus|Rep: PREDICTED:
            hypothetical protein - Strongylocentrotus purpuratus
          Length = 1799

 Score = 33.9 bits (74), Expect = 1.0
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = -1

Query: 340  VTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSD 200
            + ++L     N++SR  + Q++SS++A   FD+   LNT P+S ++D
Sbjct: 1621 IMVSLSGANVNVQSRFITAQTFSSSTASY-FDLDIGLNTDPISITAD 1666


>UniRef50_UPI0000E25792 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 414

 Score = 33.9 bits (74), Expect = 1.0
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +3

Query: 63  LCDRKLTGGPEAFPASEGLRRRPTNLRAAALRM--NVLPDRNRDPLRRSDEKLTGLVFRL 236
           L  R  +GG E FP   G+++ P  L +++ R+  N+L    +   +  D+      F+ 
Sbjct: 111 LQSRNSSGGEETFPNIRGIKKSPPQLSSSSSRLSKNILSTTGKTVHQTRDDDQPRDFFKK 170

Query: 237 GCTSNSLFAEFDEYDCRDPFLLLMLDLKS 323
               N    +   +D RD  LLL  + K+
Sbjct: 171 RNRVNESHQKSSSWDLRDMALLLNAENKT 199


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 17/24 (70%), Positives = 17/24 (70%)
 Frame = -3

Query: 263 CKERVRRAT*PKHQSGKFLVGSSQ 192
           C  RVRRAT PK Q  KFL GSSQ
Sbjct: 60  CPCRVRRATNPKTQPMKFLAGSSQ 83


>UniRef50_Q2YC80 Cluster: CheA signal transduction histidine
           kinases; n=1; Nitrosospira multiformis ATCC 25196|Rep:
           CheA signal transduction histidine kinases -
           Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849)
          Length = 784

 Score = 32.3 bits (70), Expect = 3.1
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = +3

Query: 54  VFFLCDRKLTGGPEAFPASEGLRRRPTNLRAAALRMNVLPDRNRDPLRRSDEKLTGLVFR 233
           + F C +  +G  E   A +G       L+AAA ++ V+ +   +  R  + +L  L+FR
Sbjct: 387 ITFACSQSDSGKAEIRVADDGGGINVGKLKAAAHKLGVMSEEEME--RLGESELLALIFR 444

Query: 234 LGCTSNSLFAE 266
            G T++ L  +
Sbjct: 445 SGVTTSPLITD 455


>UniRef50_A1TYN6 Cluster: Putative uncharacterized protein; n=1;
           Marinobacter aquaeolei VT8|Rep: Putative uncharacterized
           protein - Marinobacter aquaeolei (strain ATCC 700491 /
           DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
           (strain DSM 11845))
          Length = 193

 Score = 31.5 bits (68), Expect = 5.4
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 111 EGLRRRPTNLRAAALRMNV-LPDRNRDPLRRSDEKLTGLVFR 233
           EG R +P   +  A R+     DRNR+ LR  DE+LTGL  R
Sbjct: 138 EGKRVKPE--QPIAWRVTTEFADRNRNNLREQDERLTGLTLR 177


>UniRef50_Q750Z5 Cluster: AGL208Cp; n=1; Eremothecium gossypii|Rep:
           AGL208Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 861

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 215 YRTGV*VRLHVELSLCRVRRVRLPGSLPTSNVRSKVV*CNGYTYILY 355
           Y  G+ V + V   L +  R   PG+LP S ++ +V+  NG  ++LY
Sbjct: 296 YHGGIKVAVQVPKGL-KCLRAENPGTLPESTLKYRVILSNGVEWLLY 341


>UniRef50_A5E1B7 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1380

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -1

Query: 313 SNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRS 173
           SN  S   S  +  SNS    F  +PNLNT+PV  S+   + S+ RS
Sbjct: 701 SNSNSNSNSSTNTKSNS-NSNFTAKPNLNTNPVVNSNQSQNQSQNRS 746


>UniRef50_Q54VV1 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1201

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 325 DDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDL 197
           D  R   R +  S  S SSNS++     +PNLN  P S++  L
Sbjct: 157 DRDRDRDREKDSSSNSSSSNSSRNTSVQKPNLNIKPPSYNDPL 199


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 355,678,349
Number of Sequences: 1657284
Number of extensions: 6283460
Number of successful extensions: 15130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15129
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)