Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    24   0.58 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   0.58 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   0.58 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   1.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   3.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   4.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   5.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   5.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   5.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   7.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    20   9.5  

>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  PFRPPKASEGDLLT*EQLLCG*MY 168
           P RP +A EGD L+ E   CG +Y
Sbjct: 4   PLRPSEAQEGDQLSEE---CGMLY 24


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  PFRPPKASEGDLLT*EQLLCG*MY 168
           P RP +A EGD L+ E   CG +Y
Sbjct: 4   PLRPSEAQEGDQLSEE---CGMLY 24


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 97  PFRPPKASEGDLLT*EQLLCG*MY 168
           P RP +A EGD L+ E   CG +Y
Sbjct: 4   PLRPSEAQEGDQLSEE---CGMLY 24


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 310 NIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFS 206
           N   +KGS  S S +    + D+  N+N SP S +
Sbjct: 398 NGNGKKGSSDSCSDSEENSQSDITNNVN-SPASMN 431


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 HVELSLCRVRRVRLPGSLPTSNVRSKV 322
           H    LCR RR+ +  SL  +  + KV
Sbjct: 24  HFNKYLCRPRRIEIAASLDLTERQVKV 50


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 HVELSLCRVRRVRLPGSLPTSNVRSKV 322
           H    LCR RR+ +  SL  +  + KV
Sbjct: 155 HFNKYLCRPRRIEIAASLDLTERQVKV 181


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 43  MRSRSFFYVIENLLVARRPFRPPKASEGDLLT*EQLLC 156
           + +R F+Y + +L    +   PP +  G LL  E   C
Sbjct: 274 LSTRLFYYQLTDLYKKIKKAFPPLSLHGQLLWREFFYC 311


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 21  YCIRAYFNAVEVFFLCDRKLT 83
           YC+   FN   +F LC    T
Sbjct: 60  YCVSITFNVHLLFLLCSGYFT 80


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 102 ERPPGHQ*VFYHIKKRPR 49
           E PP  Q V+YH +  P+
Sbjct: 55  ETPPSPQEVYYHHQTIPQ 72


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 102 ERPPGHQ*VFYHIKKRPR 49
           E PP  Q V+YH +  P+
Sbjct: 55  ETPPSPQEVYYHHQTIPQ 72


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 102 ERPPGHQ*VFYHIKKRPR 49
           E PP  Q V+YH +  P+
Sbjct: 55  ETPPSPQEVYYHHQTIPQ 72


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +3

Query: 90  PEAFPASEGLRRRPTNLRAAALRMNVLPDRNRDPLRRSDEKL 215
           P   P SE   +            N  PD N+D LRR +  L
Sbjct: 113 PLVSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRRLEMSL 154


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 73   LSHKKKTST 47
            + HKKKTST
Sbjct: 1526 IEHKKKTST 1534


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 28  YAHISMRSRSFFYVIENLLVA 90
           YAH S    +F Y   N+ VA
Sbjct: 40  YAHSSYGRENFIYGSMNMTVA 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,195
Number of Sequences: 336
Number of extensions: 1537
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)