Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10g13
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 29 0.24
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 0.74
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 26 1.7
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 26 2.3
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 2.3
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 3.0
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 25 5.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 6.9
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 24 6.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 6.9
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 29.1 bits (62), Expect = 0.24
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 255 LFAEFDEYDCRDPFLLLMLDLKSSNAMVTHTYYILVSSEK 374
+FAEF E D +DP LL+ KS N H +L S K
Sbjct: 113 VFAEFREKDKKDPAKLLVSHNKSPNRNYHHKQNVLGPSVK 152
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 0.74
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 228 FRLGCTSNSLFAEFDEYDCRDPFLLLMLDLKSSNAMVTHTYYILVSSEK 374
F + T + A + CR+PF+L + D ++S + T Y++ SE+
Sbjct: 199 FLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKL---TQYVVKCSEQ 244
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 1.7
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -1
Query: 289 SRQSYSSNSAKREFDVQPNLNTSPVSFSSDL-LSGSRFRSGS 167
S++ S+S +FD P+LN+SP +F+S+L +S SRF S
Sbjct: 169 SQKLSKSSSDLPQFDY-PSLNSSP-TFNSNLPISSSRFEKTS 208
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 349 YVCVTIALDDFRSNIRSRKGSRQSYSSN 266
Y C A +D +++RS G R S SSN
Sbjct: 269 YFCPFSAFEDISNSVRSSCGKRLSPSSN 296
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 128 TY*PESSCFADECTTGSESR 187
+Y P SS DEC T ESR
Sbjct: 362 SYFPSSSSIPDECNTEEESR 381
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 66 CDRKLTGGPEAFPASEGLRRRPTNLRAAALRMNVLPDRNR 185
C K TG FP+ R RPT A + ++ P RNR
Sbjct: 311 CPHK-TGNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRNR 349
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 105 ASEGLRRRPTNLRAAALRMNVLPDRNRDPLRRSDEKL 215
AS G RRP +RA L PD ++ L++ + L
Sbjct: 166 ASNGYFRRPAAMRAQTLVPITQPDSKKNELKQKFKHL 202
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 6.9
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 340 VTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRF 179
+T+ D + S+IRS S Q S N+ + + + L SFS+ L S F
Sbjct: 579 LTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETIKLLQPKSNSFSTSSLIQSLF 632
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 298 RKGSRQSYSSNSAKREFDVQPNLNTSPVSFSS 203
R S SYSS+S QP++ +SF+S
Sbjct: 176 RHRSSNSYSSSSNGNHVRFQPSIAEEEISFNS 207
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 301 SRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGS 185
SR SYSSN ++P+L TS VS +S ++ S
Sbjct: 909 SRNEGTTSYSSNITVTSSTLKPSL-TSSVSTASSYIASS 946
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,220
Number of Sequences: 5004
Number of extensions: 25603
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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