Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0128 - 20389375-20389781,20389988-20392787                       29   1.2  
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    28   2.8  
11_03_0131 + 10497674-10499617                                         27   3.7  
03_03_0067 + 14230211-14231506                                         27   4.9  
03_01_0435 + 3366274-3366300,3366709-3366888,3367006-3367044           27   4.9  

>11_06_0128 - 20389375-20389781,20389988-20392787
          Length = 1068

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 189 PLRRSDEKLTGLVFRLGCTSNSLFAEFDEYDCRDPFLLLMLDLKSSNAMV 338
           P+ +++ K  GLV R+    +  +A  D   CR P  ++  D+KSSN ++
Sbjct: 843 PVDQTEMKYLGLVQRVTILLDVAYA-LDYLHCRGPAPVVHCDIKSSNVLL 891


>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -1

Query: 316 RSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGSTF 161
           ++N RS     Q + S+     FD  PNL T   S S   LS SR  S S+F
Sbjct: 185 KTNRRSSSPKFQGWQSSDPGFSFDAPPNLRT---SMSDRPLSRSRGGSPSSF 233


>11_03_0131 + 10497674-10499617
          Length = 647

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 298 RKGSRQSYSSNSAKREFDV--QPNLNTSPVSFSSDLL 194
           R+GS+    SNS+  E DV   PNL++ P  F+  ++
Sbjct: 205 RQGSKSRNQSNSSMSEKDVVGNPNLHSGPEVFTEGVI 241


>03_03_0067 + 14230211-14231506
          Length = 431

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 346 VCVTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQP 236
           VC TI++  F      R G+  S SS+ A   FD +P
Sbjct: 69  VCTTISIRSFGDGDGYRSGAAVSSSSSFASVRFDSRP 105


>03_01_0435 + 3366274-3366300,3366709-3366888,3367006-3367044
          Length = 81

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 283 QSYSSNSAKREFDVQPNL-NTSPVSFSSD 200
           Q+Y +N+AKRE++ +P + NT+ V+   D
Sbjct: 21  QAYYTNTAKREYNYRPTVRNTTSVAAVED 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,792,626
Number of Sequences: 37544
Number of extensions: 183064
Number of successful extensions: 403
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)