Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10g13
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)                  29   1.3  
SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)               28   2.9  
SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     26   8.8  
SB_42970| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)                        26   8.8  

>SB_35167| Best HMM Match : zf-HIT (HMM E-Value=0.046)
          Length = 632

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 340 VTIALDDFRSNIRSRKGSRQSYSSNSAKR-EFDVQPNLNTSPVS 212
           V +      S+  S++GSR S SSN+ +  E  V P  + SP+S
Sbjct: 109 VDLTTKSVSSDTHSKRGSRSSTSSNAQEETEMHVTPMYDASPLS 152


>SB_54271| Best HMM Match : Patatin (HMM E-Value=7.2e-25)
          Length = 337

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 28  YAHISMRSRSFFYVIENLLVARRPFRPPKA 117
           +AH  +R+ S  + ++NL    R F PP+A
Sbjct: 201 FAHFDIRNTSVQFTLQNLYRCSRAFFPPEA 230


>SB_14022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 343 CVTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPN 233
           C T +L+DFR  +  ++  R+     +A  + +VQP+
Sbjct: 8   CATPSLNDFRYQVSRKRRGRKGRDIGAAPAKKNVQPS 44


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 66  CDRKLTGGPEAFPASEGLRRRPTNLRAAALRMN 164
           C     G    FP+ +G +RRP N      R N
Sbjct: 65  CKAIKLGNARGFPSHDGEKRRPVNCNTTHYRAN 97


>SB_42970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -1

Query: 343 CVTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGS 167
           C++  L DF       K +  S++ NS  R F        S V +SS L SG  +   S
Sbjct: 109 CISDMLFDFEEKDEMEKANNASFARNSTTRGF--------SRVDYSSSLASGFNYSDTS 159


>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
          Length = 327

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -1

Query: 343 CVTIALDDFRSNIRSRKGSRQSYSSNSAKREFDVQPNLNTSPVSFSSDLLSGSRFRSGS 167
           C++  L DF       K +  S++ NS  R F        S V +SS L SG  +   S
Sbjct: 228 CISDMLFDFEEKDEMEKANNASFARNSTTRGF--------SRVDYSSSLASGFNYSDTS 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,216
Number of Sequences: 59808
Number of extensions: 203400
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)